Literature DB >> 16417505

Comparison of the structural and kinetic properties of the cytochrome c nitrite reductases from Escherichia coli, Wolinella succinogenes, Sulfurospirillum deleyianum and Desulfovibrio desulfuricans.

T A Clarke1, A M Hemmings, B Burlat, J N Butt, J A Cole, D J Richardson.   

Abstract

The recent crystallographic characterization of NrfAs from Sulfurospirillum deleyianum, Wolinella succinogenes, Escherichia coli and Desulfovibrio desulfuricans allows structurally conserved regions to be identified. Comparison of nitrite and sulphite reductase activities from different bacteria shows that the relative activities vary according to organism. By comparison of both amino acid sequences and structures, differences can be identified in the monomer-monomer interface and the active-site channel; these differences could be responsible for the observed variance in substrate activity and indicate that subtle changes in the NrfA structure may optimize the enzyme for different roles.

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Year:  2006        PMID: 16417505     DOI: 10.1042/BST0340143

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  5 in total

1.  Substrate binding and activation in the active site of cytochrome c nitrite reductase: a density functional study.

Authors:  Dmytro Bykov; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2010-12-02       Impact factor: 3.358

2.  Reductive activation of the heme iron-nitrosyl intermediate in the reaction mechanism of cytochrome c nitrite reductase: a theoretical study.

Authors:  Dmytro Bykov; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2012-03-28       Impact factor: 3.358

3.  Heme-bound nitroxyl, hydroxylamine, and ammonia ligands as intermediates in the reaction cycle of cytochrome c nitrite reductase: a theoretical study.

Authors:  Dmytro Bykov; Matthias Plog; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2013-11-23       Impact factor: 3.358

4.  Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).

Authors:  Johannes Sikorski; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Elizabeth Saunders; David Bruce; Lynne Goodwin; Sam Pitluck; Galina Ovchinnikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; John C Detter; Cliff Han; Manfred Rohde; Elke Lang; Stefan Spring; Markus Göker; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2010-03-24

5.  Nitrate reduction functional genes and nitrate reduction potentials persist in deeper estuarine sediments. Why?

Authors:  Sokratis Papaspyrou; Cindy J Smith; Liang F Dong; Corinne Whitby; Alex J Dumbrell; David B Nedwell
Journal:  PLoS One       Date:  2014-04-11       Impact factor: 3.240

  5 in total

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