Literature DB >> 16415370

Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene.

Létizia Camus-Kulandaivelu1, Jean-Baptiste Veyrieras, Delphine Madur, Valérie Combes, Marie Fourmann, Stéphanie Barraud, Pierre Dubreuil, Brigitte Gouesnard, Domenica Manicacci, Alain Charcosset.   

Abstract

To investigate the genetic basis of maize adaptation to temperate climate, collections of 375 inbred lines and 275 landraces, representative of American and European diversity, were evaluated for flowering time under short- and long-day conditions. The inbred line collection was genotyped for 55 genomewide simple sequence repeat (SSR) markers. Comparison of inbred line population structure with that of landraces, as determined with 24 SSR loci, underlined strong effects of both historical and modern selection on population structure and a clear relationship with geographical origins. The late tropical groups and the early "Northern Flint" group from the northern United States and northern Europe exhibited different flowering times. Both collections were genotyped for a 6-bp insertion/deletion in the Dwarf8 (D8idp) gene, previously reported to be potentially involved in flowering time variation in a 102 American inbred panel. Among-group D8idp differentiation was much higher than that for any SSR marker, suggesting diversifying selection. Correcting for population structure, D8idp was associated with flowering time under long-day conditions, the deletion allele showing an average earlier flowering of 29 degree days for inbreds and 145 degree days for landraces. Additionally, the deletion allele occurred at a high frequency (>80%) in Northern Flint while being almost absent (<5%) in tropical materials. Altogether, these results indicate that Dwarf8 could be involved in maize climatic adaptation through diversifying selection for flowering time.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16415370      PMCID: PMC1456379          DOI: 10.1534/genetics.105.048603

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  25 in total

1.  Association mapping in structured populations.

Authors:  J K Pritchard; M Stephens; N A Rosenberg; P Donnelly
Journal:  Am J Hum Genet       Date:  2000-05-26       Impact factor: 11.025

2.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

3.  Large scale molecular analysis of traditional European maize populations. Relationships with morphological variation.

Authors:  C Rebourg; B Gouesnard; A Charcosset
Journal:  Heredity (Edinb)       Date:  2001-05       Impact factor: 3.821

4.  A single domestication for maize shown by multilocus microsatellite genotyping.

Authors:  Yoshihiro Matsuoka; Yves Vigouroux; Major M Goodman; Jesus Sanchez G; Edward Buckler; John Doebley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

5.  Structure of linkage disequilibrium and phenotypic associations in the maize genome.

Authors:  D L Remington; J M Thornsberry; Y Matsuoka; L M Wilson; S R Whitt; J Doebley; S Kresovich; M M Goodman; E S Buckler
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-18       Impact factor: 11.205

6.  Climate and the collapse of Maya civilization.

Authors:  Gerald H Haug; Detlef Günther; Larry C Peterson; Daniel M Sigman; Konrad A Hughen; Beat Aeschlimann
Journal:  Science       Date:  2003-03-14       Impact factor: 47.728

7.  Use of SSRs for establishing heterotic groups in subtropical maize.

Authors:  J C Reif; A E Melchinger; X C Xia; M L Warburton; D A Hoisington; S K Vasal; D Beck; M Bohn; M Frisch
Journal:  Theor Appl Genet       Date:  2003-06-27       Impact factor: 5.699

8.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

9.  Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.).

Authors:  Jeppe R Andersen; Tobias Schrag; Albrecht E Melchinger; Imad Zein; Thomas Lübberstedt
Journal:  Theor Appl Genet       Date:  2005-06-03       Impact factor: 5.699

10.  The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation.

Authors:  Mande Semon; Rasmus Nielsen; Monty P Jones; Susan R McCouch
Journal:  Genetics       Date:  2004-11-15       Impact factor: 4.562

View more
  82 in total

1.  Comparative population genomics of maize domestication and improvement.

Authors:  Matthew B Hufford; Xun Xu; Joost van Heerwaarden; Tanja Pyhäjärvi; Jer-Ming Chia; Reed A Cartwright; Robert J Elshire; Jeffrey C Glaubitz; Kate E Guill; Shawn M Kaeppler; Jinsheng Lai; Peter L Morrell; Laura M Shannon; Chi Song; Nathan M Springer; Ruth A Swanson-Wagner; Peter Tiffin; Jun Wang; Gengyun Zhang; John Doebley; Michael D McMullen; Doreen Ware; Edward S Buckler; Shuang Yang; Jeffrey Ross-Ibarra
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

2.  Flowering time in maize: linkage and epistasis at a major effect locus.

Authors:  Eléonore Durand; Sophie Bouchet; Pascal Bertin; Adrienne Ressayre; Philippe Jamin; Alain Charcosset; Christine Dillmann; Maud I Tenaillon
Journal:  Genetics       Date:  2012-01-31       Impact factor: 4.562

3.  Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time.

Authors:  M Truntzler; N Ranc; M C Sawkins; S Nicolas; D Manicacci; D Lespinasse; V Ribière; P Galaup; F Servant; C Muller; D Madur; J Betran; A Charcosset; L Moreau
Journal:  Theor Appl Genet       Date:  2012-05-24       Impact factor: 5.699

4.  Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection.

Authors:  Xiaohong Yang; Jianbing Yan; Trushar Shah; Marilyn L Warburton; Qing Li; Lin Li; Yufeng Gao; Yuchao Chai; Zhiyuan Fu; Yi Zhou; Shutu Xu; Guanghong Bai; Yijiang Meng; Yanping Zheng; Jiansheng Li
Journal:  Theor Appl Genet       Date:  2010-03-27       Impact factor: 5.699

5.  A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations.

Authors:  Noah A Rosenberg; Magnus Nordborg
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

6.  Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.

Authors:  Silvio Salvi; Giorgio Sponza; Michele Morgante; Dwight Tomes; Xiaomu Niu; Kevin A Fengler; Robert Meeley; Evgueni V Ananiev; Sergei Svitashev; Edward Bruggemann; Bailin Li; Christine F Hainey; Slobodanka Radovic; Giusi Zaina; J-Antoni Rafalski; Scott V Tingey; Guo-Hua Miao; Ronald L Phillips; Roberto Tuberosa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-26       Impact factor: 11.205

7.  Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet.

Authors:  Abdoul-Aziz Saïdou; Cédric Mariac; Vivianne Luong; Jean-Louis Pham; Gilles Bezançon; Yves Vigouroux
Journal:  Genetics       Date:  2009-05-11       Impact factor: 4.562

8.  Linkage disequilibrium based association mapping of micronutrients in common bean (Phaseolus vulgaris L.): a collection of Jammu & Kashmir, India.

Authors:  Reetika Mahajan; Sajad Majeed Zargar; R K Salgotra; Ravinder Singh; Aijaz Ahmad Wani; Muslima Nazir; Parvaze A Sofi
Journal:  3 Biotech       Date:  2017-08-30       Impact factor: 2.406

9.  Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia.

Authors:  Weixun Wu; Xiao-Ming Zheng; Guangwen Lu; Zhengzheng Zhong; He Gao; Liping Chen; Chuanyin Wu; Hong-Jun Wang; Qi Wang; Kunneng Zhou; Jiu-Lin Wang; Fuqing Wu; Xin Zhang; Xiuping Guo; Zhijun Cheng; Cailin Lei; Qibing Lin; Ling Jiang; Haiyang Wang; Song Ge; Jianmin Wan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-06       Impact factor: 11.205

10.  Genetic control of photoperiod sensitivity in maize revealed by joint multiple population analysis.

Authors:  Nathan D Coles; Michael D McMullen; Peter J Balint-Kurti; Richard C Pratt; James B Holland
Journal:  Genetics       Date:  2009-12-14       Impact factor: 4.562

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.