Literature DB >> 16414056

Comparative visualization for comprehensive two-dimensional gas chromatography.

Benjamin V Hollingsworth1, Stephen E Reichenbach, Qingping Tao, Arvind Visvanathan.   

Abstract

This paper investigates methods for comparing datasets produced by comprehensive two-dimensional gas chromatography (GC x GC). Chemical comparisons are useful for process monitoring, sample classification or identification, correlative determinations, and other important tasks. GC x GC is a powerful new technology for chemical analysis, but methods for comparative visualization must address challenges posed by GC x GC data: inconsistency and complexity. The approach extends conventional techniques for image comparison by utilizing specific characteristics of GC x GC data and developing new methods for comparative visualization and analysis. The paper describes techniques that register (or align) GC x GC datasets to remove retention-time variations; normalize intensities to remove sample amount variations; compute differences in local regions to remove slight misregistrations and differences in peak shapes; employ color (hue), intensity, and saturation to simultaneously visualize differences and values; and use tools for masking, three-dimensional visualization, and tabular presentation with controls for graphical highlights to significantly improve comparative analysis of GC x GC datasets. Experimental results indicate that the comparative methods preserve chemical information and support qualitative and quantitative analyses.

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Year:  2006        PMID: 16414056      PMCID: PMC1564068          DOI: 10.1016/j.chroma.2005.11.074

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  6 in total

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Authors:  X Q Shi; I Eklund; G Tronje; U Welander; H C Stamatakis; P E Engström; G N Engström
Journal:  Dentomaxillofac Radiol       Date:  1999-01       Impact factor: 2.419

Review 2.  Image background removal in comprehensive two-dimensional gas chromatography.

Authors:  Stephen E Reichenbach; Mingtian Ni; Dongmin Zhang; Edward B Ledford
Journal:  J Chromatogr A       Date:  2003-01-24       Impact factor: 4.759

3.  Forensic analysis of ignitable liquids in fire debris by comprehensive two-dimensional gas chromatography.

Authors:  Glenn S Frysinger; Richard B Gaines
Journal:  J Forensic Sci       Date:  2002-05       Impact factor: 1.832

4.  Peak pattern variations related to comprehensive two-dimensional gas chromatography acquisition.

Authors:  Mingtian Ni; Stephen E Reichenbach; Arvind Visvanathan; Joel TerMaat; Edward B Ledford
Journal:  J Chromatogr A       Date:  2005-09-09       Impact factor: 4.759

5.  The West Falmouth oil spill after thirty years: the persistence of petroleum hydrocarbons in marsh sediments.

Authors:  Christopher M Reddy; Timothy I Eglinton; Aubrey Hounshell; Helen K White; Li Xu; Richard B Gaines; Glenn S Frysinger
Journal:  Environ Sci Technol       Date:  2002-11-15       Impact factor: 9.028

6.  Software aids for the analysis of 2D gel electrophoresis images.

Authors:  P Lemkin; C Merril; L Lipkin; M Van Keuren; W Oertel; B Shapiro; M Wade; M Schultz; E Smith
Journal:  Comput Biomed Res       Date:  1979-12
  6 in total
  5 in total

Review 1.  Fast, comprehensive two-dimensional liquid chromatography.

Authors:  Dwight R Stoll; Xiaoping Li; Xiaoli Wang; Peter W Carr; Sarah E G Porter; Sarah C Rutan
Journal:  J Chromatogr A       Date:  2007-08-30       Impact factor: 4.759

2.  OmicsVis: an interactive tool for visually analyzing metabolomics data.

Authors:  Philip Livengood; Ross Maciejewski; Wei Chen; David S Ebert
Journal:  BMC Bioinformatics       Date:  2012-05-18       Impact factor: 3.169

3.  Climate and Processing Effects on Tea (Camellia sinensis L. Kuntze) Metabolome: Accurate Profiling and Fingerprinting by Comprehensive Two-Dimensional Gas Chromatography/Time-of-Flight Mass Spectrometry.

Authors:  Federico Stilo; Giulia Tredici; Carlo Bicchi; Albert Robbat; Joshua Morimoto; Chiara Cordero
Journal:  Molecules       Date:  2020-05-24       Impact factor: 4.411

4.  Quality assessment of large yellow croaker (Larimichthys crocea) roe oil before and after refining.

Authors:  Lingyun Zhang; Wei Wei; Luyao Huang; Tingting Zheng; Rongbin Zhong; Jie Pang; Lijiao Chen; Wenjian Cheng; Peng Liang
Journal:  RSC Adv       Date:  2021-04-15       Impact factor: 3.361

5.  Effect of Inoculation with Lentilactobacillus buchneri and Lacticaseibacillus paracasei on the Maize Silage Volatilome: The Advantages of Advanced 2D-Chromatographic Fingerprinting Approaches.

Authors:  Simone Squara; Francesco Ferrero; Ernesto Tabacco; Chiara Cordero; Giorgio Borreani
Journal:  J Agric Food Chem       Date:  2022-09-14       Impact factor: 5.895

  5 in total

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