Literature DB >> 16413191

Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus.

Uri Gophna1, Robert L Charlebois, W Ford Doolittle.   

Abstract

The recently sequenced genome of the predatory delta-proteobacterium Bdellovibrio bacteriovorus provides many insights into its metabolism and evolution. Because its genes are reasonably uniform in G+C content, it was suggested that B. bacteriovorus actively resists recombination with foreign DNA and horizontal transfer of DNA from other bacteria. To investigate this further, we carried out a variety of phylogenetic and comparative genomics analyses using data from >200 microbial genomes, including several published delta-proteobacteria. Although there might be little evidence for the extensive recent transfer of genes, we demonstrate that ancient lateral gene acquisition has shaped the B. bacteriovorus genome to a great extent.

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Year:  2006        PMID: 16413191     DOI: 10.1016/j.tim.2005.12.008

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  18 in total

1.  By their genes ye shall know them: genomic signatures of predatory bacteria.

Authors:  Zohar Pasternak; Shmuel Pietrokovski; Or Rotem; Uri Gophna; Mor N Lurie-Weinberger; Edouard Jurkevitch
Journal:  ISME J       Date:  2012-11-29       Impact factor: 10.302

2.  Evolution of sensory complexity recorded in a myxobacterial genome.

Authors:  B S Goldman; W C Nierman; D Kaiser; S C Slater; A S Durkin; J A Eisen; J Eisen; C M Ronning; W B Barbazuk; M Blanchard; C Field; C Halling; G Hinkle; O Iartchuk; H S Kim; C Mackenzie; R Madupu; N Miller; A Shvartsbeyn; S A Sullivan; M Vaudin; R Wiegand; H B Kaplan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-02       Impact factor: 11.205

3.  Identification and biochemical evidence of a medium-chain-length polyhydroxyalkanoate depolymerase in the Bdellovibrio bacteriovorus predatory hydrolytic arsenal.

Authors:  Virginia Martínez; Fernando de la Peña; Javier García-Hidalgo; Isabel de la Mata; José Luis García; María Auxiliadora Prieto
Journal:  Appl Environ Microbiol       Date:  2012-06-15       Impact factor: 4.792

4.  Determination of the Predatory Capability of Bdellovibrio bacteriovorus HD100.

Authors:  Cristina Herencias; Auxiliadora M Prieto; Virginia Martínez
Journal:  Bio Protoc       Date:  2017-03-20

5.  Assembling networks of microbial genomes using linear programming.

Authors:  Catherine Holloway; Robert G Beiko
Journal:  BMC Evol Biol       Date:  2010-11-20       Impact factor: 3.260

6.  DarkHorse: a method for genome-wide prediction of horizontal gene transfer.

Authors:  Sheila Podell; Terry Gaasterland
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

7.  A global transcriptional switch between the attack and growth forms of Bdellovibrio bacteriovorus.

Authors:  Iris Karunker; Or Rotem; Mally Dori-Bachash; Edouard Jurkevitch; Rotem Sorek
Journal:  PLoS One       Date:  2013-04-16       Impact factor: 3.240

8.  Genome analysis of a simultaneously predatory and prey-independent, novel Bdellovibrio bacteriovorus from the River Tiber, supports in silico predictions of both ancient and recent lateral gene transfer from diverse bacteria.

Authors:  Laura Hobley; Thomas R Lerner; Laura E Williams; Carey Lambert; Rob Till; David S Milner; Sarah M Basford; Michael J Capeness; Andrew K Fenton; Robert J Atterbury; Maximilian A T S Harris; R Elizabeth Sockett
Journal:  BMC Genomics       Date:  2012-11-27       Impact factor: 3.969

9.  Genome evolution and the emergence of fruiting body development in Myxococcus xanthus.

Authors:  Barry Goldman; Swapna Bhat; Lawrence J Shimkets
Journal:  PLoS One       Date:  2007-12-26       Impact factor: 3.240

10.  A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Authors:  Sheila Podell; Terry Gaasterland; Eric E Allen
Journal:  BMC Bioinformatics       Date:  2008-10-07       Impact factor: 3.169

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