Literature DB >> 16413167

The first radiation hybrid map of a perch-like fish: the gilthead seabream (Sparus aurata L).

Fabrice Senger1, Catherine Priat, Christophe Hitte, Elena Sarropoulou, Rafaella Franch, Robert Geisler, Luca Bargelloni, Deborah Power, Francis Galibert.   

Abstract

Among Teleosts, Perciformes are the largest order of fishes and include numerous species of commercial importance. Perciformes also comprise species of primary interest for evolutionary studies and analysis of the sex determination systems and sex chromosome plasticity. Unfortunately, genomics tools and resources for Perciformes remain to be developed. Here, we report the production of a seabream whole-genome radiation hybrid (RH) panel in which quality was ascertained by the construction of a 2-Mb-resolution RH map. The map encompasses 440 markers (288 microsatellites, 82 gene-based markers, and 70 STS) suitable for linkage analysis and comparative mapping studies. Achievement of a RH panel and a whole-genome RH map should contribute to establishing seabream as a fish model among the Perciformes and should be of importance in aquaculture for marker-assisted selection, improvement of growth performance, and disease management. Development of RH maps in a cost-effective manner for other fishes with the described methodology will offer a powerful approach in aquaculture and will provide extended capabilities for comparing vertebrate genome evolution.

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Year:  2006        PMID: 16413167     DOI: 10.1016/j.ygeno.2005.11.019

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  25 in total

1.  Enhancing radiation hybrid mapping through whole genome amplification.

Authors:  Genesio M Karere; Leslie A Lyons; Lutz Froenicke
Journal:  Hereditas       Date:  2010-04       Impact factor: 3.271

2.  A high-resolution 15,000(Rad) radiation hybrid panel for the domestic cat.

Authors:  L H Bach; B Gandolfi; J C Grahn; L V Millon; M S Kent; K Narfstrom; S A Cole; J C Mullikin; R A Grahn; L A Lyons
Journal:  Cytogenet Genome Res       Date:  2012-07-06       Impact factor: 1.636

3.  rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.

Authors:  Alejandro A Schäffer; Edward Stallknecht Rice; William Cook; Richa Agarwala
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

4.  Identification of genes involved in immune response, microsatellite, and SNP markers from expressed sequence tags generated from hemocytes of freshwater pearl mussel (Hyriopsis cumingii).

Authors:  Zhiyi Bai; Yuxin Yin; Songnian Hu; Guiling Wang; Xiaowei Zhang; Jiale Li
Journal:  Mar Biotechnol (NY)       Date:  2008-11-28       Impact factor: 3.619

5.  Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers.

Authors:  Huseyin Kucuktas; Shaolin Wang; Ping Li; Chongbo He; Peng Xu; Zhenxia Sha; Hong Liu; Yanliang Jiang; Puttharat Baoprasertkul; Benjaporn Somridhivej; Yaping Wang; Jason Abernathy; Ximing Guo; Lei Liu; William Muir; Zhanjiang Liu
Journal:  Genetics       Date:  2009-01-26       Impact factor: 4.562

6.  Identification of Quantitative Trait Loci Associated with the Skeletal Deformity LSK complex in Gilthead Seabream (Sparus aurata L.).

Authors:  Davinia Negrín-Báez; Davinia Negrín-Báez; Silvia T Rodríguez-Ramilo; Juan M Afonso; María J Zamorano
Journal:  Mar Biotechnol (NY)       Date:  2016-02       Impact factor: 3.619

7.  A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.

Authors:  Rafaella Franch; Bruno Louro; Matina Tsalavouta; Dimitris Chatziplis; Costas S Tsigenopoulos; Elena Sarropoulou; Jenny Antonello; Andonis Magoulas; Constantinos C Mylonas; Massimiliano Babbucci; Tomaso Patarnello; Deborah M Power; Giorgos Kotoulas; Luca Bargelloni
Journal:  Genetics       Date:  2006-09-01       Impact factor: 4.562

8.  Linking the genomes of nonmodel teleosts through comparative genomics.

Authors:  E Sarropoulou; D Nousdili; A Magoulas; G Kotoulas
Journal:  Mar Biotechnol (NY)       Date:  2008-02-23       Impact factor: 3.619

9.  Survey sequencing and radiation hybrid mapping to construct comparative maps.

Authors:  Christophe Hitte; Ewen F Kirkness; Elaine A Ostrander; Francis Galibert
Journal:  Methods Mol Biol       Date:  2008

10.  Comparative analysis of catfish BAC end sequences with the zebrafish genome.

Authors:  Hong Liu; Yanliang Jiang; Shaolin Wang; Parichart Ninwichian; Benjaporn Somridhivej; Peng Xu; Jason Abernathy; Huseyin Kucuktas; Zhanjiang Liu
Journal:  BMC Genomics       Date:  2009-12-10       Impact factor: 3.969

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