Literature DB >> 16411280

Quantification of prostate MRSI data by model-based time domain fitting and frequency domain analysis.

Pieter Pels1, Esin Ozturk-Isik, Mark G Swanson, Leentje Vanhamme, John Kurhanewicz, Sarah J Nelson, Sabine Van Huffel.   

Abstract

This paper compares two spectral processing methods for obtaining quantitative measures from in vivo prostate spectra, evaluates their effectiveness, and discusses the necessary modifications for accurate results. A frequency domain analysis (FDA) method based on peak integration was compared with a time domain fitting (TDF) method, a model-based nonlinear least squares fitting algorithm. The accuracy of both methods at estimating the choline + creatine + polyamines to citrate ratio (CCP:C) was tested using Monte Carlo simulations, empirical phantom MRSI data and in vivo MRSI data. The paper discusses the different approaches employed to achieve the quantification of the overlapping choline, creatine and polyamine resonances. Monte Carlo simulations showed induced biases on the estimated CCP:C ratios. Both methods were successful in identifying tumor tissue, provided that the CCP:C ratio was greater than a given (normal) threshold. Both methods predicted the same voxel condition in 94% of the in vivo voxels (68 out of 72). Both TDF and FDA methods had the ability to identify malignant voxels in an artifact-free case study using the estimated CCP:C ratio. Comparing the ratios estimated by the TDF and the FDA, the methods predicted the same spectrum type in 17 out of 18 voxels of the in vivo case study (94.4%).

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Year:  2006        PMID: 16411280     DOI: 10.1002/nbm.1008

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  11 in total

1.  A hierarchical spectral clustering and nonlinear dimensionality reduction scheme for detection of prostate cancer from magnetic resonance spectroscopy (MRS).

Authors:  Pallavi Tiwari; Mark Rosen; Anant Madabhushi
Journal:  Med Phys       Date:  2009-09       Impact factor: 4.071

Review 2.  A decade in prostate cancer: from NMR to metabolomics.

Authors:  Elita M DeFeo; Chin-Lee Wu; W Scott McDougal; Leo L Cheng
Journal:  Nat Rev Urol       Date:  2011-05-17       Impact factor: 14.432

3.  A comparison of two post-processing analysis methods to quantify cerebral metabolites measured via proton magnetic resonance spectroscopy in HIV disease.

Authors:  Joseph Scott; Jonathan Underwood; Lucy J Garvey; Borja Mora-Peris; Alan Winston
Journal:  Br J Radiol       Date:  2016       Impact factor: 3.039

4.  Applications of chemical shift imaging to marine sciences.

Authors:  Haakil Lee; Andrey Tikunov; Michael K Stoskopf; Jeffrey M Macdonald
Journal:  Mar Drugs       Date:  2010-08-19       Impact factor: 5.118

5.  Clinical stage T1c prostate cancer: evaluation with endorectal MR imaging and MR spectroscopic imaging.

Authors:  Jingbo Zhang; Hedvig Hricak; Amita Shukla-Dave; Oguz Akin; Nicole M Ishill; Lauren J Carlino; Victor E Reuter; James A Eastham
Journal:  Radiology       Date:  2009-11       Impact factor: 11.105

Review 6.  Multiparametric magnetic resonance imaging in prostate cancer: present and future.

Authors:  John Kurhanewicz; Daniel Vigneron; Peter Carroll; Fergus Coakley
Journal:  Curr Opin Urol       Date:  2008-01       Impact factor: 2.309

7.  A hierarchical unsupervised spectral clustering scheme for detection of prostate cancer from magnetic resonance spectroscopy (MRS).

Authors:  Pallavi Tiwari; Anant Madabhushi; Mark Rosen
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

8.  Correlation of MR imaging and MR spectroscopic imaging findings with Ki-67, phospho-Akt, and androgen receptor expression in prostate cancer.

Authors:  Amita Shukla-Dave; Hedvig Hricak; Nicole M Ishill; Chaya S Moskowitz; Marija Drobnjak; Victor E Reuter; Kristen L Zakian; Peter T Scardino; Carlos Cordon-Cardo
Journal:  Radiology       Date:  2009-03       Impact factor: 11.105

Review 9.  Magnetic resonance spectroscopy imaging of the newborn brain--a technical review.

Authors:  Duan Xu; Daniel Vigneron
Journal:  Semin Perinatol       Date:  2010-02       Impact factor: 3.300

10.  On the Utility of Short Echo Time (TE) Single Voxel 1H-MRS in Non-Invasive Detection of 2-Hydroxyglutarate (2HG); Challenges and Potential Improvement Illustrated with Animal Models Using MRUI and LCModel.

Authors:  Hwon Heo; Sungjin Kim; Hyeong Hun Lee; Hye Rim Cho; Wen Jun Xu; Se-Hoon Lee; Chul-Kee Park; Sunghyouk Park; Seung Hong Choi; Hyeonjin Kim
Journal:  PLoS One       Date:  2016-01-28       Impact factor: 3.240

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