Literature DB >> 16407115

Experiment and theory for heterogeneous nucleation of protein crystals in a porous medium.

Naomi E Chayen1, Emmanuel Saridakis, Richard P Sear.   

Abstract

The determination of high-resolution structures of proteins requires crystals of suitable quality. Because of the new impetus given to structural biology by structural genomics/proteomics, the problem of crystallizing proteins is becoming increasingly acute. There is therefore an urgent requirement for the development of new efficient methods to aid crystal growth. Nucleation is the crucial step that determines the entire crystallization process. Hence, the holy grail is to design a "universal nucleant," a substrate that induces the nucleation of crystals of any protein. We report a theory for nucleation on disordered porous media and its experimental testing and validation using a mesoporous bioactive gel-glass. This material induced the crystallization of the largest number of proteins ever crystallized using a single nucleant. The combination of the model and the experimental results opens up the scope for the rational design of nucleants, leading to alternative means of controlling crystallization.

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Year:  2006        PMID: 16407115      PMCID: PMC1334630          DOI: 10.1073/pnas.0504860102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  Porous silicon: an effective nucleation-inducing material for protein crystallization.

Authors:  N E Chayen; E Saridakis; R El-Bahar; Y Nemirovsky
Journal:  J Mol Biol       Date:  2001-09-28       Impact factor: 5.469

2.  The 1.45 A three-dimensional structure of C-phycocyanin from the thermophilic cyanobacterium Synechococcus elongatus.

Authors:  Jon Nield; Pierre J Rizkallah; James Barber; Naomi E Chayen
Journal:  J Struct Biol       Date:  2003-02       Impact factor: 2.867

3.  Onset of heterogeneous crystal nucleation in colloidal suspensions.

Authors:  A Cacciuto; S Auer; D Frenkel
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

Review 4.  Turning protein crystallisation from an art into a science.

Authors:  Naomi E Chayen
Journal:  Curr Opin Struct Biol       Date:  2004-10       Impact factor: 6.809

5.  Statistical theory of nucleation in the presence of uncharacterized impurities.

Authors:  Richard P Sear
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-08-31

6.  Heterogeneous and epitaxial nucleation of protein crystals on mineral surfaces.

Authors:  A McPherson; P Shlichta
Journal:  Science       Date:  1988-01-22       Impact factor: 47.728

7.  Epitaxial growth of protein crystals on lipid layers.

Authors:  A M Edwards; S A Darst; S A Hemming; Y Li; R D Kornberg
Journal:  Nat Struct Biol       Date:  1994-03

8.  Protein crystallisation on chemically modified mica surfaces.

Authors:  Giuseppe Falini; Simona Fermani; Giovanna Conforti; Alberto Ripamonti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26
  8 in total
  34 in total

1.  Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization.

Authors:  Cory J Gerdts; Valentina Tereshko; Maneesh K Yadav; Irina Dementieva; Frank Collart; Andrzej Joachimiak; Raymond C Stevens; Peter Kuhn; Anthony Kossiakoff; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-12-11       Impact factor: 15.336

2.  High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.

Authors:  Michihiro Sugahara; Yukuhiko Asada; Katsumi Shimizu; Hitoshi Yamamoto; Neratur K Lokanath; Hisashi Mizutani; Bagautdin Bagautdinov; Yoshinori Matsuura; Midori Taketa; Yuichi Kageyama; Naoko Ono; Yuko Morikawa; Yukiko Tanaka; Hiroki Shimada; Takanobu Nakamoto; Mitsuaki Sugahara; Masaki Yamamoto; Naoki Kunishima
Journal:  J Struct Funct Genomics       Date:  2008-08-02

3.  Entropy-driven crystal formation on highly strained substrates.

Authors:  John R Savage; Stefan F Hopp; Rajesh Ganapathy; Sharon J Gerbode; Andreas Heuer; Itai Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

4.  Mesopores provide an amorphous state suitable for studying biomolecular structures at cryogenic temperatures.

Authors:  Ya-Wen Huang; Yei-Chen Lai; Chia-Jung Tsai; Yun-Wei Chiang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

5.  The role of nanopore shape in surface-induced crystallization.

Authors:  Ying Diao; Takuya Harada; Allan S Myerson; T Alan Hatton; Bernhardt L Trout
Journal:  Nat Mater       Date:  2011-09-11       Impact factor: 43.841

6.  Observing the formation of ice and organic crystals in active sites.

Authors:  James M Campbell; Fiona C Meldrum; Hugo K Christenson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-19       Impact factor: 11.205

7.  Determination of the phase diagram for soluble and membrane proteins.

Authors:  Sameer Talreja; Sarah L Perry; Sudipto Guha; Venkateswarlu Bhamidi; Charles F Zukoski; Paul J A Kenis
Journal:  J Phys Chem B       Date:  2010-04-08       Impact factor: 2.991

8.  The effect of surface nanometre-scale morphology on protein adsorption.

Authors:  Pasquale Emanuele Scopelliti; Antonio Borgonovo; Marco Indrieri; Luca Giorgetti; Gero Bongiorno; Roberta Carbone; Alessandro Podestà; Paolo Milani
Journal:  PLoS One       Date:  2010-07-29       Impact factor: 3.240

9.  The contribution of polystyrene nanospheres towards the crystallization of proteins.

Authors:  Johanna M Kallio; Nina Hakulinen; Juha P Kallio; Merja H Niemi; Susanna Kärkkäinen; Juha Rouvinen
Journal:  PLoS One       Date:  2009-01-15       Impact factor: 3.240

10.  Interaction between plate make and protein in protein crystallisation screening.

Authors:  Gordon J King; Kai-En Chen; Gautier Robin; Jade K Forwood; Begoña Heras; Anil S Thakur; Bostjan Kobe; Simon P Blomberg; Jennifer L Martin
Journal:  PLoS One       Date:  2009-11-16       Impact factor: 3.240

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