Literature DB >> 16406159

Emerging Corynebacterium glutamicum systems biology.

Volker F Wendisch1, Michael Bott, Jörn Kalinowski, Marco Oldiges, Wolfgang Wiechert.   

Abstract

Corynebacterium glutamicum is widely used for the biotechnological production of amino acids. Amino acid producing strains have been improved classically by mutagenesis and screening as well as in a rational manner using recombinant DNA technology. Metabolic flux analysis may be viewed as the first systems approach to C. glutamicum physiology since it combines isotope labeling data with metabolic network models of the biosynthetic and central metabolic pathways. However, only the complete genome sequence of C. glutamicum and post-genomics methods such as transcriptomics and proteomics have allowed characterizing metabolic and regulatory properties of this bacterium on a truly global level. Besides transcriptomics and proteomics, metabolomics and modeling approaches have now been established. Systems biology, which uses systematic genomic, proteomic and metabolomic technologies with the final aim of constructing comprehensive and predictive models of complex biological systems, is emerging for C. glutamicum. We will present current developments that advanced our insight into fundamental biology of C. glutamicum and that in the future will enable novel biotechnological applications for the improvement of amino acid production.

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Year:  2006        PMID: 16406159     DOI: 10.1016/j.jbiotec.2005.12.002

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  19 in total

1.  RosR (Cg1324), a hydrogen peroxide-sensitive MarR-type transcriptional regulator of Corynebacterium glutamicum.

Authors:  Michael Bussmann; Meike Baumgart; Michael Bott
Journal:  J Biol Chem       Date:  2010-07-19       Impact factor: 5.157

2.  Genome shuffling improves thermotolerance and glutamic acid production of Corynebacteria glutamicum.

Authors:  Pu Zheng; Miao Liu; Xiao-de Liu; Qiao-Yan Du; Ye Ni; Zhi-Hao Sun
Journal:  World J Microbiol Biotechnol       Date:  2011-09-27       Impact factor: 3.312

Review 3.  Systems metabolic engineering: genome-scale models and beyond.

Authors:  John Blazeck; Hal Alper
Journal:  Biotechnol J       Date:  2010-07       Impact factor: 4.677

4.  Characterization of phosphate-containing metabolites by calcium adduction and electron capture dissociation.

Authors:  Haichuan Liu; Hyun Ju Yoo; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2008-03-22       Impact factor: 3.109

Review 5.  Two-component signal transduction in Corynebacterium glutamicum and other corynebacteria: on the way towards stimuli and targets.

Authors:  Michael Bott; Melanie Brocker
Journal:  Appl Microbiol Biotechnol       Date:  2012-04-28       Impact factor: 4.813

6.  Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters.

Authors:  Simon Unthan; Meike Baumgart; Andreas Radek; Marius Herbst; Daniel Siebert; Natalie Brühl; Anna Bartsch; Michael Bott; Wolfgang Wiechert; Kay Marin; Stephan Hans; Reinhard Krämer; Gerd Seibold; Julia Frunzke; Jörn Kalinowski; Christian Rückert; Volker F Wendisch; Stephan Noack
Journal:  Biotechnol J       Date:  2014-10-08       Impact factor: 4.677

7.  Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.

Authors:  Heiko Neuweger; Marcus Persicke; Stefan P Albaum; Thomas Bekel; Michael Dondrup; Andrea T Hüser; Jörn Winnebald; Jessica Schneider; Jörn Kalinowski; Alexander Goesmann
Journal:  BMC Syst Biol       Date:  2009-08-23

8.  CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.

Authors:  Heiko Neuweger; Jan Baumbach; Stefan Albaum; Thomas Bekel; Michael Dondrup; Andrea T Hüser; Jörn Kalinowski; Sebastian Oehm; Alfred Pühler; Sven Rahmann; Jochen Weile; Alexander Goesmann
Journal:  BMC Syst Biol       Date:  2007-11-22

9.  Linking Cytoscape and the corynebacterial reference database CoryneRegNet.

Authors:  Jan Baumbach; Leonard Apeltsin
Journal:  BMC Genomics       Date:  2008-04-21       Impact factor: 3.969

Review 10.  Corynebacterium glutamicum promoters: a practical approach.

Authors:  Miroslav Pátek; Jiří Holátko; Tobias Busche; Jörn Kalinowski; Jan Nešvera
Journal:  Microb Biotechnol       Date:  2013-01-10       Impact factor: 5.813

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