Literature DB >> 16401083

Lifetimes and reactivities of some 1,2-didehydroazepines commonly used in photoaffinity labeling experiments in aqueous solutions.

Mary S Rizk1, Xiaofeng Shi, Matthew S Platz.   

Abstract

The reactive 1,2-didehydroazepine (cyclic ketenimine) intermediates produced upon photolysis of phenyl azide, 3-hydroxyphenyl azide, 3-methoxyphenyl azide, and 3-nitrophenyl azide in water and in HEPES buffer were studied by laser flash photolysis techniques with UV-vis detection of the transient intermediates. The lifetimes of the 1,2-didehydroazepines were obtained along with the absolute rate constants of their reactions with typical amino acids, nucleosides, and other simple reagents present in a biochemical milieu. The nitro substituent greatly accelerates the bimolecular reactions of the cyclic ketenimines, and the 3-methoxy group greatly decelerates the absolute reactivity of 1,2-didehydroazepines. The intermediate produced by photolysis of 3-hydroxyphenyl azide is much more reactive than the intermediate produced by photolysis of 3-methoxyphenyl azide. We propose that the hydroxyl-substituted 1,2-didehydoazepines rapidly (<10 micros) tautomerize in water to form azepinones and much more rapidly than the corresponding 3-methoxy-substituted cyclic ketenimines undergo hydrolysis. Azepinones react more rapidly with nucleophiles than do methoxy-substituted 1,2-didehydroazepines and are the active species present upon the photolysis of 3-hydroxyphenyl azide in aqueous solution.

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Year:  2006        PMID: 16401083     DOI: 10.1021/bi0516632

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  5 in total

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Authors:  James V Oakley; Benito F Buksh; David F Fernández; Daniel G Oblinsky; Ciaran P Seath; Jacob B Geri; Gregory D Scholes; David W C MacMillan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

2.  Computational study of the Curtius-like rearrangements of phosphoryl, phosphinyl, and phosphinoyl azides and their corresponding nitrenes.

Authors:  Ryan D McCulla; Gamal A Gohar; Christopher M Hadad; Matthew S Platz
Journal:  J Org Chem       Date:  2007-11-14       Impact factor: 4.354

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Journal:  J Am Chem Soc       Date:  2009-08-19       Impact factor: 15.419

4.  Molecular determinants of matrix metalloproteinase-12 covalent modification by a photoaffinity probe: insights into activity-based probe development and conformational variability of matrix metalloproteinases.

Authors:  Anne-Sophie Dabert-Gay; Bertrand Czarny; Laurent Devel; Fabrice Beau; Evelyne Lajeunesse; Sarah Bregant; Robert Thai; Athanasios Yiotakis; Vincent Dive
Journal:  J Biol Chem       Date:  2008-09-05       Impact factor: 5.157

5.  Molecular basis for functional switching of GFP by two disparate non-native post-translational modifications of a phenyl azide reaction handle.

Authors:  Andrew M Hartley; Harley L Worthy; Samuel C Reddington; Pierre J Rizkallah; D Dafydd Jones
Journal:  Chem Sci       Date:  2016-06-29       Impact factor: 9.825

  5 in total

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