Literature DB >> 16392911

Gibbs free-energy estimates from direct path-sampling computations.

G Adjanor1, M Athènes.   

Abstract

We have implemented a path-sampling scheme enabling a direct estimation of Gibbs free energy. This scheme consists of a Monte Carlo sampling of constant-pressure Langevin paths, followed by an ensemble averaging carried out over the Markov chain of paths. In practice, we sample an umbrella path ensemble, which requires to rigorously define a statistical weight for the paths, equivalent of the Boltzmann weight. This statistical weight is a function of an effective work related to the path. The umbrella ensemble is chosen so that its work histogram overlaps with the histograms corresponding to the ensembles of forward and backward paths. We have finally investigated the relations between numerical efficiency and overlapping properties of the various work histograms. This analysis yields a built-in criterion for diagnosing the convergence during a single-run simulation.

Year:  2005        PMID: 16392911     DOI: 10.1063/1.2137698

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Estimating thermodynamic expectations and free energies in expanded ensemble simulations: Systematic variance reduction through conditioning.

Authors:  Manuel Athènes; Pierre Terrier
Journal:  J Chem Phys       Date:  2017-05-21       Impact factor: 3.488

2.  Time step rescaling recovers continuous-time dynamical properties for discrete-time Langevin integration of nonequilibrium systems.

Authors:  David A Sivak; John D Chodera; Gavin E Crooks
Journal:  J Phys Chem B       Date:  2014-03-17       Impact factor: 2.991

3.  Quantifying Configuration-Sampling Error in Langevin Simulations of Complex Molecular Systems.

Authors:  Josh Fass; David A Sivak; Gavin E Crooks; Kyle A Beauchamp; Benedict Leimkuhler; John D Chodera
Journal:  Entropy (Basel)       Date:  2018-04-26       Impact factor: 2.524

  3 in total

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