Literature DB >> 16392570

Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water.

Thomas la Cour Jansen1, Tomoyuki Hayashi, Wei Zhuang, Shaul Mukamel.   

Abstract

The effects of hydrogen-bond forming and breaking kinetics on the linear and coherent third-order infrared spectra of the OH stretch of HOD in D2O are described by Markovian, not necessarily Gaussian, fluctuations and simulated using the stochastic Liouville equations. Slow (0.5 ps) fluctuations are represented by a collective electrostatic coordinate, whereas fast (<100 fs) frequency fluctuations are described using either a second collective electrostatic coordinate or a four-state jump (FSJ) model for hydrogen-bonding configurations. Parameters for both models were obtained using a 1-ns molecular-dynamics trajectory calculated using the TIP4P force field combined with an electrostatic ab initio map. The asymmetry of the photon-echo spectra (larger linewidth on the blue side than on the red side) predicted by the FSJ is in better agreement with recent experiments.

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Year:  2005        PMID: 16392570     DOI: 10.1063/1.2008251

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Comparison of linear and 2D IR spectra in the presence of fast exchange.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2006-05-04       Impact factor: 2.991

2.  Coherent infrared multidimensional spectra of the OH stretching band in liquid water simulated by direct nonlinear exciton propagation.

Authors:  Cyril Falvo; Benoit Palmieri; Shaul Mukamel
Journal:  J Chem Phys       Date:  2009-05-14       Impact factor: 3.488

Review 3.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

4.  Computational Modeling of the Nitrile Stretching Vibration of 5-Cyanoindole in Water.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Phys Chem Lett       Date:  2010-02-01       Impact factor: 6.475

5.  Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations.

Authors:  Sayan Bagchi; Benjamin T Nebgen; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2010-12-08       Impact factor: 15.419

6.  Hydrogen bonding and Raman, IR, and 2D-IR spectroscopy of dilute HOD in liquid D2O.

Authors:  B Auer; R Kumar; J R Schmidt; J L Skinner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-18       Impact factor: 11.205

7.  Coherent two dimensional infrared spectroscopy of a cyclic decapeptide antamanide. A simulation study of the amide-I and A bands.

Authors:  Cyril Falvo; Tomoyuki Hayashi; Wei Zhuang; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2008-09-09       Impact factor: 2.991

8.  Stochastic Liouville equations for coherent multidimensional spectroscopy of excitons.

Authors:  Frantisek Sanda; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2008-10-17       Impact factor: 2.991

Review 9.  Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges.

Authors:  Wei Zhuang; Tomoyuki Hayashi; Shaul Mukamel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

  9 in total

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