Literature DB >> 16390982

Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates.

Darrell P Chandler1, Oleg Alferov, Boris Chernov, Don S Daly, Julia Golova, Alexander Perov, Miroslava Protic, Richard Robison, Matthew Schipma, Amanda White, Alan Willse.   

Abstract

A genome-independent microarray and new statistical techniques were used to genotype Bacillus strains and quantitatively compare DNA fingerprints with the known taxonomy of the genus. A synthetic DNA standard was used to understand process level variability and lead to recommended standard operating procedures for microbial forensics and clinical diagnostics.

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Mesh：

Year:  2006        PMID： 16390982      PMCID： PMC1351933          DOI： 10.1128/JCM.44.1.244-250.2006

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  22 in total

1.  Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations.

Authors:  M L Lee; F C Kuo; G A Whitmore; J Sklar
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

2.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Authors:  B M Bolstad; R A Irizarry; M Astrand; T P Speed
Journal:  Bioinformatics       Date:  2003-01-22       Impact factor: 6.937

3.  The importance of thermodynamic equilibrium for high throughput gene expression arrays.

Authors:  Gyan Bhanot; Yoram Louzoun; Jianhua Zhu; Charles DeLisi
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

4.  Region growing: a new approach.

Authors:  S A Hojjatoleslami; J Kittler
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

5.  Fluorescent Amplified Fragment Length Polymorphism Analysis of Norwegian Bacillus cereus and Bacillus thuringiensis Soil Isolates.

Authors:  L O Ticknor; A B Kolstø; K K Hill; P Keim; M T Laker; M Tonks; P J Jackson
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

6.  Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis.

Authors:  Anders Johansson; Jason Farlow; Pär Larsson; Meghan Dukerich; Elias Chambers; Mona Byström; James Fox; May Chu; Mats Forsman; Anders Sjöstedt; Paul Keim
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

7.  Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes.

Authors:  J Versalovic; T Koeuth; J R Lupski
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

8.  Differentiation of Cryptosporidium parvum, C. muris, and C. baileyi by PCR-RFLP analysis of the 18S rRNA gene.

Authors:  X Leng; D A Mosier; R D Oberst
Journal:  Vet Parasitol       Date:  1996-03       Impact factor: 2.738

9.  Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates.

Authors:  Alan Willse; Timothy M Straub; Sharon C Wunschel; Jack A Small; Douglas R Call; Don S Daly; Darrell P Chandler
Journal:  Nucleic Acids Res       Date:  2004-03-22       Impact factor: 16.971

10.  PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States.

Authors:  B Swaminathan; T J Barrett; S B Hunter; R V Tauxe
Journal:  Emerg Infect Dis       Date:  2001 May-Jun       Impact factor: 6.883
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  4 in total

1.  Food microbial pathogen detection and analysis using DNA microarray technologies.

Authors:  Avraham Rasooly; Keith E Herold
Journal:  Foodborne Pathog Dis       Date:  2008-08       Impact factor: 3.171

2.  Nonvolatile copolymer compositions for fabricating gel element microarrays.

Authors:  Julia B Golova; Boris K Chernov; Alexander N Perov; Jennifer Reynolds; Yvonne L Linger; Alexander Kukhtin; Darrell P Chandler
Journal:  Anal Biochem       Date:  2011-10-05       Impact factor: 3.365

3.  A perspective on microarrays: current applications, pitfalls, and potential uses.

Authors:  Pratik Jaluria; Konstantinos Konstantopoulos; Michael Betenbaugh; Joseph Shiloach
Journal:  Microb Cell Fact       Date:  2007-01-25       Impact factor: 5.328

Review 4.  Microarrays in infection and immunity.

Authors:  Jennifer A Maynard; Ryan Myhre; Benjamin Roy
Journal:  Curr Opin Chem Biol       Date:  2007-05-17       Impact factor: 8.822
  4 in total

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