Literature DB >> 16389615

Continua of interactions between pairs of atoms in molecular crystals.

Paulina M Dominiak1, Anna Makal, Paul R Mallinson, Kinga Trzcinska, Julita Eilmes, Eugeniusz Grech, Maksymilian Chruszcz, Władek Minor, Krzysztof Woźniak.   

Abstract

The electron density distributions in crystals of five previously studied DMAN complexes and five Schiff bases (two new ones) have been analysed in terms of various properties of bond critical points (BCPs) found in the pair-wise interactions in their lattices. We analysed the continua of interactions including covalent/ionic bonds as well as hydrogen bonds and all other types of weak interactions for all pairs of interacting atoms. The charge density at BCPs and local kinetic and potential energy densities vary exponentially with internuclear distance (or other measures of separation). The parameters of the dependences appear to be characteristics of particular pairs of atom types. The Laplacian and the total (sum of kinetic and potential) energy density at BCPs show similar behaviour with the dependence being of the Morse type. The components lambda1, lambda2, lambda3 of the Laplacian at BCPs vary systematically with internuclear distance according to the type of atom pair. For lambda1 and lambda2 the distribution is of the exponential type, whereas lambda3 does not seem to follow any simple functional form, consistent with previous theoretical findings. Analytical nonlinear dependences of Laplacian on charge density have been found. They agree reasonably well with those obtained by least square fit of the Laplacian to charge density data. There are four distinct regions of the [symbol: see text]2rho(BCP)/rho(BCP) space, generated by E(BCP) = 0 and G(BCP)/rho(BCP) = 1 conditions. Two regions clearly correspond to the shared-shell and closed-shell interactions and the other two to some intermediate situation.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16389615     DOI: 10.1002/chem.200500600

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  4 in total

1.  On the Coexistence of the Carbene⋯H-D Hydrogen Bond and Other Accompanying Interactions in Forty Dimers of N-Heterocyclic-Carbenes (I, IMe2, IiPr2, ItBu2, IMes2, IDipp2, IAd2; I = imidazol-2-ylidene) and Some Fundamental Proton Donors (HF, HCN, H2O, MeOH, NH3).

Authors:  Mirosław Jabłoński
Journal:  Molecules       Date:  2022-09-05       Impact factor: 4.927

2.  Topological properties of hydrogen bonds and covalent bonds from charge densities obtained by the maximum entropy method (MEM).

Authors:  Jeanette Netzel; Sander van Smaalen
Journal:  Acta Crystallogr B       Date:  2009-08-28

3.  Weak Intermolecular Interactions in a Series of Bioactive Oxazoles.

Authors:  Anita M Grześkiewicz; Tomasz Stefański; Maciej Kubicki
Journal:  Molecules       Date:  2021-05-19       Impact factor: 4.411

4.  (E)-4-Hy-droxy-2-{[(2-phenyl-eth-yl)iminium-yl]meth-yl}phenolate.

Authors:  David Ortegon-Reyna; Cesar Garcias-Morales; Efren V García-Báez; Armando Ariza-Castolo; Francisco J Martínez-Martínez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.