Literature DB >> 16387777

Automated detection of elementary calcium release events using the á trous wavelet transform.

F v Wegner1, M Both, R H A Fink.   

Abstract

We developed an algorithm for the automated detection and analysis of elementary Ca2+ release events (ECRE) based on the two-dimensional nondecimated wavelet transform. The transform is computed with the "à trous" algorithm using the cubic B-spline as the basis function and yields a multiresolution analysis of the image. This transform allows for highly efficient noise reduction while preserving signal amplitudes. ECRE detection is performed at the wavelet levels, thus using the whole spectral information contained in the image. The algorithm was tested on synthetic data at different noise levels as well as on experimental data of ECRE. The noise dependence of the statistical properties of the algorithm (detection sensitivity and reliability) was determined from synthetic data and detection parameters were selected to optimize the detection of experimental ECRE. The wavelet-based method shows considerably higher detection sensitivity and less false-positive counts than previously employed methods. It allows a more efficient detection of elementary Ca2+ release events than conventional methods, in particular in the presence of elevated background noise levels. The subsequent analysis of the morphological parameters of ECRE is reliably reproduced by the analysis procedure that is applied to the median filtered raw data. Testing the algorithm more rigorously showed that event parameter histograms (amplitude, rise time, full duration at half-maximum, and full width at half-maximum) were faithfully extracted from synthetic, "in-focus" and "out-of-focus" line scan sparks. Most importantly, ECRE obtained with laser scanning confocal microscopy of chemically skinned mammalian skeletal muscle fibers could be analyzed automatically to reproducibly establish event parameter histograms. In summary, our method provides a new valuable tool for highly reliable automated detection of ECRE in muscle but can also be adapted to other preparations.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16387777      PMCID: PMC1386793          DOI: 10.1529/biophysj.105.069930

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  A preferred amplitude of calcium sparks in skeletal muscle.

Authors:  E Ríos; N Shirokova; W G Kirsch; G Pizarro; M D Stern; H Cheng; A González
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  Fast imaging in two dimensions resolves extensive sources of Ca2+ sparks in frog skeletal muscle.

Authors:  G Brum; A González; J Rengifo; N Shirokova; E Ríos
Journal:  J Physiol       Date:  2000-11-01       Impact factor: 5.182

3.  A cardiac dihydropyridine receptor II-III loop peptide inhibits resting Ca(2+) sparks in ferret ventricular myocytes.

Authors:  Y Li; D M Bers
Journal:  J Physiol       Date:  2001-11-15       Impact factor: 5.182

4.  Spark- and ember-like elementary Ca2+ release events in skinned fibres of adult mammalian skeletal muscle.

Authors:  W G Kirsch; D Uttenweiler; R H Fink
Journal:  J Physiol       Date:  2001-12-01       Impact factor: 5.182

5.  The spark and its ember: separately gated local components of Ca(2+) release in skeletal muscle.

Authors:  A González; W G Kirsch; N Shirokova; G Pizarro; M D Stern; E Ríos
Journal:  J Gen Physiol       Date:  2000-02       Impact factor: 4.086

6.  A simple numerical model of calcium spark formation and detection in cardiac myocytes.

Authors:  G D Smith; J E Keizer; M D Stern; W J Lederer; H Cheng
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

7.  Theoretical analysis of the Ca2+ spark amplitude distribution.

Authors:  L T Izu; W G Wier; C W Balke
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  Partial depletion of sarcoplasmic reticulum calcium does not prevent calcium sparks in rat ventricular myocytes.

Authors:  L S Song; M D Stern; E G Lakatta; H Cheng
Journal:  J Physiol       Date:  1997-12-15       Impact factor: 5.182

9.  Modulation of the frequency of spontaneous sarcoplasmic reticulum Ca2+ release events (Ca2+ sparks) by myoplasmic [Mg2+] in frog skeletal muscle.

Authors:  A Lacampagne; M G Klein; M F Schneider
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

10.  Ca2+ sparks and embers of mammalian muscle. Properties of the sources.

Authors:  J Zhou; G Brum; A Gonzalez; B S Launikonis; M D Stern; E Rios
Journal:  J Gen Physiol       Date:  2003-07       Impact factor: 4.086

View more
  19 in total

1.  Tracking stars: automated two-dimensional analysis of Ca²⁺ events. Focus on "Automated region of interest analysis of dynamic Ca²⁺ signals in image sequences".

Authors:  Kay-Pong Yip; James S K Sham
Journal:  Am J Physiol Cell Physiol       Date:  2012-05-30       Impact factor: 4.249

2.  Automated region of interest analysis of dynamic Ca²+ signals in image sequences.

Authors:  Michael Francis; Xun Qian; Chimène Charbel; Jonathan Ledoux; J C Parker; Mark S Taylor
Journal:  Am J Physiol Cell Physiol       Date:  2012-04-25       Impact factor: 4.249

3.  Multidimensional detection and analysis of Ca2+ sparks in cardiac myocytes.

Authors:  Mark-Anthony Bray; Nicholas A Geisse; Kevin Kit Parker
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

4.  Speckle reduction in optical coherence tomography images using digital filtering.

Authors:  Aydogan Ozcan; Alberto Bilenca; Adrien E Desjardins; Brett E Bouma; Guillermo J Tearney
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-07       Impact factor: 2.129

5.  Increasing sensitivity of Ca2+ spark detection in noisy images by application of a matched-filter object detection algorithm.

Authors:  Cherrie H T Kong; Christian Soeller; Mark B Cannell
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

6.  CellSpecks: A Software for Automated Detection and Analysis of Calcium Channels in Live Cells.

Authors:  Syed Islamuddin Shah; Martin Smith; Divya Swaminathan; Ian Parker; Ghanim Ullah; Angelo Demuro
Journal:  Biophys J       Date:  2018-10-25       Impact factor: 4.033

7.  Elementary Ca2+ release events in mammalian skeletal muscle: effects of the anaesthetic drug thiopental.

Authors:  F v Wegner; M Both; R H A Fink; O Friedrich
Journal:  J Muscle Res Cell Motil       Date:  2006-08-04       Impact factor: 2.698

8.  An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging.

Authors:  Kyle L Ellefsen; Brett Settle; Ian Parker; Ian F Smith
Journal:  Cell Calcium       Date:  2014-06-24       Impact factor: 6.817

9.  cAMP/PKA-dependent increases in Ca Sparks, oscillations and SR Ca stores in retinal arteriolar myocytes after exposure to vasopressin.

Authors:  Owen Jeffries; Mary K McGahon; Peter Bankhead; Maria Manfredi Lozano; C Norman Scholfield; Tim M Curtis; J Graham McGeown
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-12-03       Impact factor: 4.799

10.  Automated analysis of dynamic Ca2+ signals in image sequences.

Authors:  Michael Francis; Josh Waldrup; Xun Qian; Mark S Taylor
Journal:  J Vis Exp       Date:  2014-06-16       Impact factor: 1.355

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.