Literature DB >> 16385034

Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens.

Jessica E Butler1, Richard H Glaven, Abraham Esteve-Núñez, Cinthia Núñez, Evgenya S Shelobolina, Daniel R Bond, Derek R Lovley.   

Abstract

The mechanism of fumarate reduction in Geobacter sulfurreducens was investigated. The genome contained genes encoding a heterotrimeric fumarate reductase, FrdCAB, with homology to the fumarate reductase of Wolinella succinogenes and the succinate dehydrogenase of Bacillus subtilis. Mutation of the putative catalytic subunit of the enzyme resulted in a strain that lacked fumarate reductase activity and was unable to grow with fumarate as the terminal electron acceptor. The mutant strain also lacked succinate dehydrogenase activity and did not grow with acetate as the electron donor and Fe(III) as the electron acceptor. The mutant strain could grow with acetate as the electron donor and Fe(III) as the electron acceptor if fumarate was provided to alleviate the need for succinate dehydrogenase activity in the tricarboxylic acid cycle. The growth rate of the mutant strain under these conditions was faster and the cell yields were higher than for wild type grown under conditions requiring succinate dehydrogenase activity, suggesting that the succinate dehydrogenase reaction consumes energy. An orthologous frdCAB operon was present in Geobacter metallireducens, which cannot grow with fumarate as the terminal electron acceptor. When a putative dicarboxylic acid transporter from G. sulfurreducens was expressed in G. metallireducens, growth with fumarate as the sole electron acceptor was possible. These results demonstrate that, unlike previously described organisms, G. sulfurreducens and possibly G. metallireducens use the same enzyme for both fumarate reduction and succinate oxidation in vivo.

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Year:  2006        PMID: 16385034      PMCID: PMC1347312          DOI: 10.1128/JB.188.2.450-455.2006

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  33 in total

Review 1.  Succinate:quinone oxidoreductase in the bacteria Paracoccus denitrificans and Bacillus subtilis.

Authors:  Lars Hederstedt
Journal:  Biochim Biophys Acta       Date:  2002-01-17

2.  Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture.

Authors:  Abraham Esteve-Núñez; Mary Rothermich; Manju Sharma; Derek Lovley
Journal:  Environ Microbiol       Date:  2005-05       Impact factor: 5.491

3.  Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese.

Authors:  D R Lovley; E J Phillips
Journal:  Appl Environ Microbiol       Date:  1988-06       Impact factor: 4.792

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

Review 5.  Dissimilatory Fe(III) and Mn(IV) reduction.

Authors:  Derek R Lovley; Dawn E Holmes; Kelly P Nevin
Journal:  Adv Microb Physiol       Date:  2004       Impact factor: 3.517

6.  OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.

Authors:  Ching Leang; M V Coppi; D R Lovley
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

7.  Menaquinone-dependent succinate dehydrogenase of bacteria catalyzes reversed electron transport driven by the proton potential.

Authors:  J Schirawski; G Unden
Journal:  Eur J Biochem       Date:  1998-10-01

8.  Identification of the gene encoding the sole physiological fumarate reductase in Shewanella oneidensis MR-1.

Authors:  Tamara M Maier; Judith M Myers; Charles R Myers
Journal:  J Basic Microbiol       Date:  2003       Impact factor: 2.281

9.  Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals.

Authors:  D R Lovley; S J Giovannoni; D C White; J E Champine; E J Phillips; Y A Gorby; S Goodwin
Journal:  Arch Microbiol       Date:  1993       Impact factor: 2.552

10.  Measurement of protein using bicinchoninic acid.

Authors:  P K Smith; R I Krohn; G T Hermanson; A K Mallia; F H Gartner; M D Provenzano; E K Fujimoto; N M Goeke; B J Olson; D C Klenk
Journal:  Anal Biochem       Date:  1985-10       Impact factor: 3.365

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  30 in total

1.  Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling.

Authors:  Yinjie J Tang; Adam L Meadows; James Kirby; Jay D Keasling
Journal:  J Bacteriol       Date:  2006-11-17       Impact factor: 3.490

2.  Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.

Authors:  Laurie N DiDonato; Sara A Sullivan; Barbara A Methé; Kelly P Nevin; Reg England; Derek R Lovley
Journal:  J Bacteriol       Date:  2006-10-13       Impact factor: 3.490

3.  Periplasmic electron transfer via the c-type cytochromes MtrA and FccA of Shewanella oneidensis MR-1.

Authors:  Bjoern Schuetz; Marcus Schicklberger; Johannes Kuermann; Alfred M Spormann; Johannes Gescher
Journal:  Appl Environ Microbiol       Date:  2009-10-16       Impact factor: 4.792

4.  Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.

Authors:  Lance D Miller; Jennifer J Mosher; Amudhan Venkateswaran; Zamin K Yang; Anthony V Palumbo; Tommy J Phelps; Mircea Podar; Christopher W Schadt; Martin Keller
Journal:  BMC Microbiol       Date:  2010-05-24       Impact factor: 3.605

5.  Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.

Authors:  Muktak Aklujkar; Derek R Lovley
Journal:  BMC Evol Biol       Date:  2010-07-28       Impact factor: 3.260

6.  The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.

Authors:  Muktak Aklujkar; Julia Krushkal; Genevieve DiBartolo; Alla Lapidus; Miriam L Land; Derek R Lovley
Journal:  BMC Microbiol       Date:  2009-05-27       Impact factor: 3.605

7.  Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.

Authors:  Ching Leang; Julia Krushkal; Toshiyuki Ueki; Marko Puljic; Jun Sun; Katy Juárez; Cinthia Núñez; Gemma Reguera; Raymond DiDonato; Bradley Postier; Ronald M Adkins; Derek R Lovley
Journal:  BMC Genomics       Date:  2009-07-22       Impact factor: 3.969

8.  Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.

Authors:  Toshiyuki Ueki; Derek R Lovley
Journal:  Nucleic Acids Res       Date:  2009-11-25       Impact factor: 16.971

9.  Characterization of proton production and consumption associated with microbial metabolism.

Authors:  Karthikeyan Srinivasan; Radhakrishnan Mahadevan
Journal:  BMC Biotechnol       Date:  2010-01-20       Impact factor: 2.563

10.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.

Authors:  Jessica E Butler; Nelson D Young; Derek R Lovley
Journal:  BMC Genomics       Date:  2010-01-17       Impact factor: 3.969

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