Literature DB >> 16383645

Self-regulating gene: an exact solution.

J E M Hornos1, D Schultz, G C P Innocentini, J Wang, A M Walczak, J N Onuchic, P G Wolynes.   

Abstract

An exact steady-state solution of the stochastic equations governing the behavior of a gene regulated by a self-generated proteomic atmosphere is presented. The solutions depend on an adiabaticity parameter measuring the relative rate of DNA-protein unbinding and protein degradation. The steady-state solution reveals deviations from the commonly used Ackers et al approximation based on the equilibrium law of mass action, allowing anticooperative behavior in the "nonadiabatic" limit of slow binding and unbinding rates. Noise from binding and unbinding events dominates the shot noise of protein synthesis and degradation up to quite high values of the adiabaticity parameter.

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Year:  2005        PMID: 16383645     DOI: 10.1103/PhysRevE.72.051907

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  73 in total

1.  Landscape and global stability of nonadiabatic and adiabatic oscillations in a gene network.

Authors:  Haidong Feng; Bo Han; Jin Wang
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Landscape, flux, correlation, resonance, coherence, stability, and key network wirings of stochastic circadian oscillation.

Authors:  Chunhe Li; Erkang Wang; Jin Wang
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

3.  Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis.

Authors:  Zach Hensel; Haidong Feng; Bo Han; Christine Hatem; Jin Wang; Jie Xiao
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

4.  Potential and flux landscapes quantify the stability and robustness of budding yeast cell cycle network.

Authors:  Jin Wang; Chunhe Li; Erkang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-14       Impact factor: 11.205

5.  Abduction and asylum in the lives of transcription factors.

Authors:  Anat Burger; Aleksandra M Walczak; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

6.  Biological role of noise encoded in a genetic network motif.

Authors:  Mark Kittisopikul; Gürol M Süel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

7.  Bimodal gene expression in noncooperative regulatory systems.

Authors:  Anna Ochab-Marcinek; Marcin Tabaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

8.  Dichotomous noise models of gene switches.

Authors:  Davit A Potoyan; Peter G Wolynes
Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

9.  Absolute rate theories of epigenetic stability.

Authors:  Aleksandra M Walczak; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-16       Impact factor: 11.205

10.  Gene regulation and noise reduction by coupling of stochastic processes.

Authors:  Alexandre F Ramos; José Eduardo M Hornos; John Reinitz
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-02-26
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