Literature DB >> 16378430

Chemomechanics of surface stresses induced by DNA hybridization.

Jeanne C Stachowiak1, Min Yue, Kenneth Castelino, Arup Chakraborty, Arun Majumdar.   

Abstract

When biomolecular reactions occur on one surface of a microcantilever beam, changes in intermolecular forces create surface stresses that bend the cantilever. While this phenomenon has been exploited to create label-free biosensors and biomolecular actuators, the mechanisms through which chemical free energy is transduced to mechanical work in such hybrid systems are not fully understood. To gain insight into these mechanisms, we use DNA hybridization as a model reaction system. We first show that the surface grafting density of single-stranded probe DNA (sspDNA) on a surface is strongly correlated to its radius of gyration in solution, which in turn depends on its persistence length and the DNA chain length. Since the persistence length depends on ionic strength, the grafting density of sspDNA can be controlled by changing a solution's ionic strength. The surface stresses produced by the reaction of complementary single-stranded target DNA (sstDNA) to sspDNA depend on the length of DNA, the grafting density, and the hybridization efficiency. We, however, observe a remarkable trend: regardless of the length and grafting density of sspDNA, the surface stress follows an exponential scaling relation with the density of hybridized sspDNA.

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Year:  2006        PMID: 16378430     DOI: 10.1021/la0521645

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  5 in total

1.  An electrostatic model for DNA surface hybridization.

Authors:  Ian Y Wong; Nicholas A Melosh
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  Nanomechanical detection of cholera toxin using microcantilevers functionalized with ganglioside nanodiscs.

Authors:  Soo-Hyun Tark; Aditi Das; Stephen Sligar; Vinayak P Dravid
Journal:  Nanotechnology       Date:  2010-10-04       Impact factor: 3.874

3.  Kinetic mechanisms in morpholino-DNA surface hybridization.

Authors:  Yatao Liu; Damion Irving; Wanqiong Qiao; Dongbiao Ge; Rastislav Levicky
Journal:  J Am Chem Soc       Date:  2011-07-12       Impact factor: 15.419

4.  Electrical Stimulus Controlled Binding/Unbinding of Human Thrombin-Aptamer Complex.

Authors:  Agnivo Gosai; Xiao Ma; Ganesh Balasubramanian; Pranav Shrotriya
Journal:  Sci Rep       Date:  2016-11-22       Impact factor: 4.379

5.  Theoretical Analysis for Bending of Single-Stranded DNA Adsorption on Microcantilever Sensors.

Authors:  Zou-Qing Tan; Yang-Chun Chen; Neng-Hui Zhang
Journal:  Sensors (Basel)       Date:  2018-08-26       Impact factor: 3.576

  5 in total

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