Literature DB >> 16377611

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression.

Jonathon Blake1, Christian Schwager, Misha Kapushesky, Alvis Brazma.   

Abstract

UNLABELLED: With the production of whole genome microarray chips the ability arises to investigate whether the regulation of particular groups of genes may be influenced by their chromosomal localization. Chromosome Co-Localization probability calculator (ChroCoLoc) is a publicly available web-based tool for the analysis of co-localization of co-expressed genes identified by microarray experiments. AVAILABILITY: http://www.ebi.ac.uk/expressionprofiler/

Mesh：

Year:  2005        PMID： 16377611     DOI： 10.1093/bioinformatics/btk022

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Developmental staging of male murine embryonic gonad by SAGE analysis.

Authors:  Tin-Lap Lee; Yunmin Li; Diana Alba; Queenie P Vong; Shao-Ming Wu; Vanessa Baxendale; Owen M Rennert; Yun-Fai Chris Lau; Wai-Yee Chan
Journal:  J Genet Genomics       Date:  2009-04       Impact factor: 4.275

2.  eQTL Viewer: visualizing how sequence variation affects genome-wide transcription.

Authors:  Wei Zou; David L Aylor; Zhao-Bang Zeng
Journal:  BMC Bioinformatics       Date:  2007-01-09       Impact factor: 3.169

3.  Identification of Aberrant Chromosomal Regions in Human Breast Cancer Using Gene Expression Data and Related Gene Information.

Authors:  Hong-Jiu Wang; Meng Zhou; Li Jia; Jie Sun; Hong-Bo Shi; Shu-Lin Liu; Zhen-Zhen Wang
Journal:  Med Sci Monit       Date:  2015-08-29

4.  Aging and replicative senescence have related effects on human stem and progenitor cells.

Authors:  Wolfgang Wagner; Simone Bork; Patrick Horn; Damir Krunic; Thomas Walenda; Anke Diehlmann; Vladimir Benes; Jonathon Blake; Franz-Xaver Huber; Volker Eckstein; Petra Boukamp; Anthony D Ho
Journal:  PLoS One       Date:  2009-06-09       Impact factor: 3.240

5.  Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.

Authors:  Katleen De Preter; Roland Barriot; Frank Speleman; Jo Vandesompele; Yves Moreau
Journal:  Nucleic Acids Res       Date:  2008-03-16       Impact factor: 16.971

6.  Replicative senescence of mesenchymal stem cells: a continuous and organized process.

Authors:  Wolfgang Wagner; Patrick Horn; Mirco Castoldi; Anke Diehlmann; Simone Bork; Rainer Saffrich; Vladimir Benes; Jonathon Blake; Stefan Pfister; Volker Eckstein; Anthony D Ho
Journal:  PLoS One       Date:  2008-05-21       Impact factor: 3.240

7.  Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila.

Authors:  Enrique Blanco; Miguel Pignatelli; Sergi Beltran; Adrià Punset; Silvia Pérez-Lluch; Florenci Serras; Roderic Guigó; Montserrat Corominas
Journal:  Genome Biol       Date:  2008-09-10       Impact factor: 13.583
  7 in total

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