Literature DB >> 16363800

Ionization of zwitterionic amine substrates bound to monomeric sarcosine oxidase.

Gouhua Zhao1, Marilyn Schuman Jorns.   

Abstract

Monomeric sarcosine oxidase (MSOX) binds the L-proline zwitterion (pKa = 10.6). The reactive substrate anion is generated by ionization of the ES complex (pKa = 8.0). Tyr317 was mutated to Phe to determine whether this step might involve proton transfer to an active site base. The mutation does not eliminate the ionizable group in the ES complex (pKa = 8.9) but does cause a 20-fold decrease in the maximum rate of the reductive half-reaction. Kinetically determined Kd values for the ES complex formed with L-proline agree with results obtained in spectral titrations with the wild-type or mutant enzyme. Unlike the wild-type enzyme, Kd values with the mutant enzyme are pH-dependent, suggesting that the mutation has perturbed the pKa of a group that affects the Kd. As compared with the wild-type enzyme, an increase in charge transfer band energy is observed for mutant enzyme complexes with substrate analogues while a 10-fold decrease in the charge transfer band extinction coefficient is found for the complex with the L-proline anion. The results eliminate Tyr317 as a possible acceptor of the proton released upon substrate ionization. Since previous studies rule out the only other nearby base, we conclude that L-proline is the ionizable group in the ES complex and that amino acids are activated for oxidation upon binding to MSOX by stabilization of the reactive substrate anion. Tyr317 may play a role in substrate activation and optimizing binding, as judged by the effects of its mutation on the observed pKa, reaction rates, and charge transfer bands.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16363800      PMCID: PMC2764489          DOI: 10.1021/bi051898d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data.

Authors:  S Strickland; G Palmer; V Massey
Journal:  J Biol Chem       Date:  1975-06-10       Impact factor: 5.157

2.  Monomeric sarcosine oxidase: role of histidine 269 in catalysis.

Authors:  Gouhua Zhao; Hui Song; Zhi-Wei Chen; F Scott Mathews; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

3.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction.

Authors:  S N Ho; H D Hunt; R M Horton; J K Pullen; L R Pease
Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

4.  pH and kinetic isotope effects in d-amino acid oxidase catalysis.

Authors:  C M Harris; L Pollegioni; S Ghisla
Journal:  Eur J Biochem       Date:  2001-11

5.  Optimizing the Michaelis complex of trimethylamine dehydrogenase: identification of interactions that perturb the ionization of substrate and facilitate catalysis with trimethylamine base.

Authors:  J Basran; M J Sutcliffe; N S Scrutton
Journal:  J Biol Chem       Date:  2001-09-11       Impact factor: 5.157

6.  Monomeric sarcosine oxidase: 2. Kinetic studies with sarcosine, alternate substrates, and a substrate analogue.

Authors:  M A Wagner; M S Jorns
Journal:  Biochemistry       Date:  2000-08-01       Impact factor: 3.162

7.  Organization of the multiple coenzymes and subunits and role of the covalent flavin link in the complex heterotetrameric sarcosine oxidase.

Authors:  M Eschenbrenner; L J Chlumsky; P Khanna; F Strasser; M S Jorns
Journal:  Biochemistry       Date:  2001-05-08       Impact factor: 3.162

8.  Monomeric sarcosine oxidase: evidence for an ionizable group in the E.S complex.

Authors:  Gouhua Zhao; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

9.  Molecular complex of lumiflavin and 2-aminobenzoic acid: crystal structure, crystal spectra, and solution properties.

Authors:  H S Shieh; S Ghisla; L K Hanson; M L Ludwig; C E Nordman
Journal:  Biochemistry       Date:  1981-08-04       Impact factor: 3.162

10.  Molecular characterization of NikD, a new flavoenzyme important in the biosynthesis of nikkomycin antibiotics.

Authors:  David Venci; Guohua Zhao; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

View more
  7 in total

1.  Structural characterization of mutations at the oxygen activation site in monomeric sarcosine oxidase .

Authors:  Marilyn Schuman Jorns; Zhi-Wei Chen; F Scott Mathews
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

2.  Spectral and kinetic characterization of the michaelis charge transfer complex in monomeric sarcosine oxidase.

Authors:  Gouhua Zhao; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

3.  Crystal structure of LAAO from Calloselasma rhodostoma with an L-phenylalanine substrate: insights into structure and mechanism.

Authors:  Ibrahim M Moustafa; Scott Foster; Artem Y Lyubimov; Alice Vrielink
Journal:  J Mol Biol       Date:  2006-09-16       Impact factor: 5.469

4.  Crystal structure of novel dye-linked L-proline dehydrogenase from hyperthermophilic archaeon Aeropyrum pernix.

Authors:  Haruhiko Sakuraba; Takenori Satomura; Ryushi Kawakami; Kwang Kim; Yusuke Hara; Kazunari Yoneda; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2012-04-16       Impact factor: 5.157

5.  An electrochemical sarcosine sensor based on biomimetic recognition.

Authors:  Tailin Liu; Bo Fu; Jincheng Chen; Kang Li
Journal:  Mikrochim Acta       Date:  2019-02-01       Impact factor: 5.833

Review 6.  Oxidation of amines by flavoproteins.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2009-08-03       Impact factor: 4.013

7.  pH dependence of a mammalian polyamine oxidase: insights into substrate specificity and the role of lysine 315.

Authors:  Michelle Henderson Pozzi; Vijay Gawandi; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2009-02-24       Impact factor: 3.162

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.