Literature DB >> 16357033

EDGE: extraction and analysis of differential gene expression.

Jeffrey T Leek1, Eva Monsen, Alan R Dabney, John D Storey.   

Abstract

EDGE (Extraction of Differential Gene Expression) is an open source, point-and-click software program for the significance analysis of DNA microarray experiments. EDGE can perform both standard and time course differential expression analysis. The functions are based on newly developed statistical theory and methods. This document introduces the EDGE software package.

Mesh：

Year:  2005        PMID： 16357033     DOI： 10.1093/bioinformatics/btk005

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  131 in total

1.  Intermittent hypoxia activates temporally coordinated transcriptional programs in visceral adipose tissue.

Authors:  Sina A Gharib; Abdelnaby Khalyfa; Amal Abdelkarim; Vijay Ramesh; Mohamed Buazza; Navita Kaushal; Bharat Bhushan; David Gozal
Journal:  J Mol Med (Berl)       Date:  2011-11-16       Impact factor: 4.599

2.  Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli.

Authors:  Mickaël Le Gac; Jessica Plucain; Thomas Hindré; Richard E Lenski; Dominique Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  A computationally efficient modular optimal discovery procedure.

Authors:  Sangsoon Woo; Jeffrey T Leek; John D Storey
Journal:  Bioinformatics       Date:  2010-12-24       Impact factor: 6.937

4.  Gene-expression variation within and among human populations.

Authors:  John D Storey; Jennifer Madeoy; Jeanna L Strout; Mark Wurfel; James Ronald; Joshua M Akey
Journal:  Am J Hum Genet       Date:  2007-01-11       Impact factor: 11.025

5.  N-Acylethanolamine metabolism interacts with abscisic acid signaling in Arabidopsis thaliana seedlings.

Authors:  Neal D Teaster; Christy M Motes; Yuhong Tang; William C Wiant; Matthew Q Cotter; Yuh-Shuh Wang; Aruna Kilaru; Barney J Venables; Karl H Hasenstein; Gabriel Gonzalez; Elison B Blancaflor; Kent D Chapman
Journal:  Plant Cell       Date:  2007-08-31       Impact factor: 11.277

6.  Development of a genomic metric that can be rapidly used to predict clinical outcome in severely injured trauma patients.

Authors:  Alex G Cuenca; Lori F Gentile; M Cecilia Lopez; Ricardo Ungaro; Huazhi Liu; Wenzhong Xiao; Junhee Seok; Michael N Mindrinos; Darwin Ang; Tezcan Ozrazgat Baslanti; Azra Bihorac; Philip A Efron; Joseph Cuschieri; H Shaw Warren; Ronald G Tompkins; Ronald V Maier; Henry V Baker; Lyle L Moldawer
Journal:  Crit Care Med       Date:  2013-05       Impact factor: 7.598

7.  Expression microarray analysis implicates apoptosis and interferon-responsive mechanisms in susceptibility to experimental cerebral malaria.

Authors:  Fiona E Lovegrove; Sina A Gharib; Samir N Patel; Cheryl A Hawkes; Kevin C Kain; W Conrad Liles
Journal:  Am J Pathol       Date:  2007-11-08       Impact factor: 4.307

8.  Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Authors:  Yuling Jiao; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277

Review 9.  Cellular and bacterial profiles associated with oral epithelium-microbiota interactions.

Authors:  Jeffrey J Mans; Erik L Hendrickson; Murray Hackett; Richard J Lamont
Journal:  Periodontol 2000       Date:  2010-02       Impact factor: 7.589

10.  Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling.

Authors:  Jian-Ying Zhou; Ravi K Krovvidi; Yuqian Gao; Hong Gao; Brianne O Petritis; Asit K De; Carol L Miller-Graziano; Paul E Bankey; Vladislav A Petyuk; Carrie D Nicora; Therese R Clauss; Ronald J Moore; Tujin Shi; Joseph N Brown; Amit Kaushal; Wenzhong Xiao; Ronald W Davis; Ronald V Maier; Ronald G Tompkins; Wei-Jun Qian; David G Camp; Richard D Smith
Journal:  Proteomics Clin Appl       Date:  2013-05-22       Impact factor: 3.494
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