Literature DB >> 16356286

A large-scale screening of the normalized mammalian mitochondrial gene expression profiles.

Sergey V Anisimov1.   

Abstract

Mammalian mitochondrial genomes are organized in a conserved and extremely compact manner, encoding molecules that play a vital role in oxidative phosphorylation (OXPHOS) and carry out a number of other important biological functions. A large-scale screening of the normalized mitochondrial gene expression profiles generated from publicly available mammalian serial analysis of gene expression (SAGE) datasets (over 17.7 millions of tags) was performed in this study. Acquired SAGE libraries represent an extensive range of human, mouse, rat, bovine and swine cell and tissue samples (normal and pathological) in a variety of conditions. Using a straightforward in silico algorithm, variations in total mitochondrial gene expression, as well as in the expression of individual genes encoded by mitochondrial genomes are addressed, and common patterns in the species- and tissue-specific mitochondrial gene expression profiles are discussed.

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Year:  2005        PMID: 16356286     DOI: 10.1017/S0016672305007718

Source DB:  PubMed          Journal:  Genet Res        ISSN: 0016-6723            Impact factor:   1.588


  4 in total

1.  A Prevalence of Imprinted Genes within the Total Transcriptomes of Human Tissues and Cells.

Authors:  Sergey V Anisimov
Journal:  Mol Biol Int       Date:  2012-09-11

2.  Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.

Authors:  Wiesław Babik; Michał Stuglik; Weihong Qi; Marzanna Kuenzli; Katarzyna Kuduk; Paweł Koteja; Jacek Radwan
Journal:  BMC Genomics       Date:  2010-06-21       Impact factor: 3.969

3.  Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors.

Authors:  Christopher A Hamm; Jeff W Stevens; Hehuang Xie; Elio F Vanin; Jose A Morcuende; Hakeem Abdulkawy; Elisabeth A Seftor; Simone T Sredni; Jared M Bischof; Deli Wang; Sergey Malchenko; Maria de Fatima Bonaldo; Thomas L Casavant; Mary J C Hendrix; Marcelo B Soares
Journal:  BMC Cancer       Date:  2010-09-01       Impact factor: 4.430

4.  Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells.

Authors:  Oliver Rackham; Stefan M K Davies; Anne-Marie J Shearwood; Kristina L Hamilton; James Whelan; Aleksandra Filipovska
Journal:  Nucleic Acids Res       Date:  2009-08-03       Impact factor: 16.971

  4 in total

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