Literature DB >> 16354122

Copy number variants and pharmacogenomics.

Karim Ouahchi1, Neal Lindeman, Charles Lee.   

Abstract

The earliest pharmacogenomic studies focused on highly penetrant sequence polymorphisms in drug-metabolizing enzymes. The recent discovery of the widespread occurrence of copy number variants/polymorphisms in the human genome holds promise for new pharmacogenomic discoveries, aside from the commonly used single nucleotide polymorphism approach. Here we review the discovery of copy number variants and speculate on their implications for pathophysiology and pharmacogenomics.

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Year:  2006        PMID: 16354122     DOI: 10.2217/14622416.7.1.25

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  17 in total

1.  Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies.

Authors:  Jared R Kohler; David J Cutler
Journal:  Am J Hum Genet       Date:  2007-08-14       Impact factor: 11.025

2.  Copy number variation and warfarin dosing: evaluation of CYP2C9, VKORC1, CYP4F2, GGCX and CALU.

Authors:  Stuart A Scott; Manishkumar Patel; Suparna Martis; Steven A Lubitz; Sarina van der Zee; Chang Yoo; Lisa Edelmann; Jonathan L Halperin; Robert J Desnick
Journal:  Pharmacogenomics       Date:  2011-12-21       Impact factor: 2.533

3.  Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.

Authors:  Daisuke Komura; Fan Shen; Shumpei Ishikawa; Karen R Fitch; Wenwei Chen; Jane Zhang; Guoying Liu; Sigeo Ihara; Hiroshi Nakamura; Matthew E Hurles; Charles Lee; Stephen W Scherer; Keith W Jones; Michael H Shapero; Jing Huang; Hiroyuki Aburatani
Journal:  Genome Res       Date:  2006-11-22       Impact factor: 9.043

Review 4.  Next-generation sequencing and large genome assemblies.

Authors:  Joseph Henson; German Tischler; Zemin Ning
Journal:  Pharmacogenomics       Date:  2012-06       Impact factor: 2.533

5.  Copy-number analysis of topoisomerase and thymidylate synthase genes in frozen and FFPE DNAs of colorectal cancers.

Authors:  Jinsheng Yu; Ryan Miller; Wanghai Zhang; Mala Sharma; Vicky Holtschlag; Mark A Watson; Howard L McLeod
Journal:  Pharmacogenomics       Date:  2008-10       Impact factor: 2.533

Review 6.  Complex genetics of obesity in mouse models.

Authors:  Daniel Pomp; Derrick Nehrenberg; Daria Estrada-Smith
Journal:  Annu Rev Nutr       Date:  2008       Impact factor: 11.848

Review 7.  Genetic studies of African populations: an overview on disease susceptibility and response to vaccines and therapeutics.

Authors:  Giorgio Sirugo; Branwen J Hennig; Adebowale A Adeyemo; Alice Matimba; Melanie J Newport; Muntaser E Ibrahim; Kelli K Ryckman; Alessandra Tacconelli; Renato Mariani-Costantini; Giuseppe Novelli; Himla Soodyall; Charles N Rotimi; Raj S Ramesar; Sarah A Tishkoff; Scott M Williams
Journal:  Hum Genet       Date:  2008-05-30       Impact factor: 4.132

8.  The genomic architecture of segmental duplications and associated copy number variants in dogs.

Authors:  Thomas J Nicholas; Ze Cheng; Mario Ventura; Katrina Mealey; Evan E Eichler; Joshua M Akey
Journal:  Genome Res       Date:  2009-01-07       Impact factor: 9.043

9.  Impact of gene copy number variation on anesthesia in Drosophila melanogaster.

Authors:  Debasmita P Alone; Jason C Rodriguez; Cameron L Noland; Howard A Nash
Journal:  Anesthesiology       Date:  2009-07       Impact factor: 7.892

10.  Whole genome association studies of neuropsychiatric disease: An emerging era of collaborative genetic discovery.

Authors:  Margaret A Keller; Katrina Gwinn; Josefina Nash; Jonathan Horsford; Ran Zhang; Stephen S Rich; Roderick A Corriveau
Journal:  Neuropsychiatr Dis Treat       Date:  2007       Impact factor: 2.570

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