Literature DB >> 16339365

Fish genomics and biology.

Hugues Roest Crollius1, Jean Weissenbach.   

Abstract

The last common ancestor between fish and mammals dates back to the very origin of the vertebrate lineage and today, half of modern vertebrates are fish. It is thus not surprising that several fish species have played important roles in recent years to advance our understanding of vertebrate genome evolution, to inform us on the structure of human genes, and, somewhat more unexpectedly, to provide leads to understanding the function of genes involved in human diseases. Genome sequence comparisons between such distantly related organisms are highly informative due to the accumulation of neutral mutations in nonfunctional regions. Yet humans and fishes share many developmental pathways, organ systems, and physiological mechanisms, making conclusions relevant to human biology. The respective advantages of zebrafish, medaka, Tetraodon, or Takifugu have been well exploited so far with bioinformatics analyses and molecular biology techniques. However the full potential of fish genomics is about to be unleashed with the integration of more traditional disciplines such as biochemistry and physiology, with the study of additional species such as carp, trout, or tilapia and a broadening of its applications to environmental genomics or aquaculture.

Entities:  

Mesh:

Year:  2005        PMID: 16339365     DOI: 10.1101/gr.3735805

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  38 in total

1.  The Fugu tyrp1 promoter directs specific GFP expression in zebrafish: tools to study the RPE and the neural crest-derived melanophores.

Authors:  Jian Zou; Friedrich Beermann; Jianxin Wang; Koichi Kawakami; Xiangyun Wei
Journal:  Pigment Cell Res       Date:  2006-12

2.  The zebrafish genome contains two inducible, functional cyclooxygenase-2 genes.

Authors:  Tomo-O Ishikawa; Kevin J P Griffin; Utpal Banerjee; Harvey R Herschman
Journal:  Biochem Biophys Res Commun       Date:  2006-11-09       Impact factor: 3.575

3.  Origin of INSL3-mediated testicular descent in therian mammals.

Authors:  Jae-Il Park; Jenia Semyonov; Chia Lin Chang; Wei Yi; Wesley Warren; Sheau Yu Teddy Hsu
Journal:  Genome Res       Date:  2008-05-07       Impact factor: 9.043

4.  Annotation of the Nuclear Receptors in an Estuarine Fish species, Fundulus heteroclitus.

Authors:  William S Baldwin; W Tyler Boswell; Gautam Ginjupalli; Elizabeth J Litoff
Journal:  Nucl Receptor Res       Date:  2017

5.  Idiopathic-type scoliosis is not exclusive to bipedalism.

Authors:  Kristen F Gorman; Felix Breden
Journal:  Med Hypotheses       Date:  2008-12-12       Impact factor: 1.538

6.  Co-expression of neighboring genes in the zebrafish (Danio rerio) genome.

Authors:  Huai-Kuang Tsai; Pei-Ying Huang; Cheng-Yan Kao; Daryi Wang
Journal:  Int J Mol Sci       Date:  2009-08-21       Impact factor: 6.208

7.  Construction of a taste-blind medaka fish and quantitative assay of its preference-aversion behavior.

Authors:  Y Aihara; A Yasuoka; S Iwamoto; Y Yoshida; T Misaka; K Abe
Journal:  Genes Brain Behav       Date:  2008-08-12       Impact factor: 3.449

8.  An atlas of the speed of copy number changes in animal gene families and its implications.

Authors:  Deng Pan; Liqing Zhang
Journal:  PLoS One       Date:  2009-10-23       Impact factor: 3.240

9.  The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing.

Authors:  Heiner Kuhl; Alfred Beck; Grzegorz Wozniak; Adelino V M Canario; Filip A M Volckaert; Richard Reinhardt
Journal:  BMC Genomics       Date:  2010-01-27       Impact factor: 3.969

10.  Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platform.

Authors:  Joan Cerdà; Jaume Mercadé; Juan José Lozano; Manuel Manchado; Angèle Tingaud-Sequeira; Antonio Astola; Carlos Infante; Silke Halm; Jordi Viñas; Barbara Castellana; Esther Asensio; Pedro Cañavate; Gonzalo Martínez-Rodríguez; Francesc Piferrer; Josep V Planas; Francesc Prat; Manuel Yúfera; Olga Durany; Francesc Subirada; Elisabet Rosell; Tamara Maes
Journal:  BMC Genomics       Date:  2008-10-30       Impact factor: 3.969

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