Literature DB >> 16339362

Genomics in C. elegans: so many genes, such a little worm.

Ladeana W Hillier1, Alan Coulson, John I Murray, Zhirong Bao, John E Sulston, Robert H Waterston.   

Abstract

The Caenorhabditis elegans genome sequence is now complete, fully contiguous telomere to telomere and totaling 100,291,840 bp. The sequence has catalyzed the collection of systematic data sets and analyses, including a curated set of 19,735 protein-coding genes--with >90% directly supported by experimental evidence--and >1300 noncoding RNA genes. High-throughput efforts are under way to complete the gene sets, along with studies to characterize gene expression, function, and regulation on a genome-wide scale. The success of the worm project has had a profound effect on genome sequencing and on genomics more broadly. We now have a solid platform on which to build toward the lofty goal of a true molecular understanding of worm biology with all its implications including those for human health.

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Year:  2005        PMID: 16339362     DOI: 10.1101/gr.3729105

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  62 in total

1.  A spatial and temporal map of C. elegans gene expression.

Authors:  W Clay Spencer; Georg Zeller; Joseph D Watson; Stefan R Henz; Kathie L Watkins; Rebecca D McWhirter; Sarah Petersen; Vipin T Sreedharan; Christian Widmer; Jeanyoung Jo; Valerie Reinke; Lisa Petrella; Susan Strome; Stephen E Von Stetina; Menachem Katz; Shai Shaham; Gunnar Rätsch; David M Miller
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 2.  A biochemist's guide to Caenorhabditis elegans.

Authors:  Ann K Corsi
Journal:  Anal Biochem       Date:  2006-08-11       Impact factor: 3.365

Review 3.  The animal in the genome: comparative genomics and evolution.

Authors:  Richard R Copley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-04-27       Impact factor: 6.237

4.  A differential sequencing-based analysis of the C. elegans noncoding transcriptome.

Authors:  Tengfei Xiao; Yunfei Wang; Huaxia Luo; Lihui Liu; Guifeng Wei; Xiaowei Chen; Yu Sun; Xiaomin Chen; Geir Skogerbø; Runsheng Chen
Journal:  RNA       Date:  2012-02-16       Impact factor: 4.942

5.  The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.

Authors:  Michelle M Kudron; Alec Victorsen; Louis Gevirtzman; LaDeana W Hillier; William W Fisher; Dionne Vafeados; Matt Kirkey; Ann S Hammonds; Jeffery Gersch; Haneen Ammouri; Martha L Wall; Jennifer Moran; David Steffen; Matt Szynkarek; Samantha Seabrook-Sturgis; Nader Jameel; Madhura Kadaba; Jaeda Patton; Robert Terrell; Mitch Corson; Timothy J Durham; Soo Park; Swapna Samanta; Mei Han; Jinrui Xu; Koon-Kiu Yan; Susan E Celniker; Kevin P White; Lijia Ma; Mark Gerstein; Valerie Reinke; Robert H Waterston
Journal:  Genetics       Date:  2017-12-28       Impact factor: 4.562

6.  A microfluidic device for automated, high-speed microinjection of Caenorhabditis elegans.

Authors:  Pengfei Song; Xianke Dong; Xinyu Liu
Journal:  Biomicrofluidics       Date:  2016-02-26       Impact factor: 2.800

7.  Multigenome DNA sequence conservation identifies Hox cis-regulatory elements.

Authors:  Steven G Kuntz; Erich M Schwarz; John A DeModena; Tristan De Buysscher; Diane Trout; Hiroaki Shizuya; Paul W Sternberg; Barbara J Wold
Journal:  Genome Res       Date:  2008-11-03       Impact factor: 9.043

8.  The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection.

Authors:  Cindy Martens; Yves Van de Peer
Journal:  BMC Genomics       Date:  2010-06-03       Impact factor: 3.969

9.  Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.

Authors:  Housheng He; Jie Wang; Tao Liu; X Shirley Liu; Tiantian Li; Yunfei Wang; Zuwei Qian; Haixia Zheng; Xiaopeng Zhu; Tao Wu; Baochen Shi; Wei Deng; Wei Zhou; Geir Skogerbø; Runsheng Chen
Journal:  Genome Res       Date:  2007-09-04       Impact factor: 9.043

10.  Polymorphic segmental duplication in the nematode Caenorhabditis elegans.

Authors:  Ismael A Vergara; Allan K Mah; Jim C Huang; Maja Tarailo-Graovac; Robert C Johnsen; David L Baillie; Nansheng Chen
Journal:  BMC Genomics       Date:  2009-07-21       Impact factor: 3.969

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