Literature DB >> 16339361

Grains of knowledge: genomics of model cereals.

Andrew H Paterson1, Michael Freeling, Takuji Sasaki.   

Abstract

The economic and scientific importance of the cereals has motivated a rich history of research into their genetics, development, and evolution. The nearly completed sequence of the rice genome is emblematic of a transition to high-throughput genomics and computational biology that has also pervaded study of many other cereals. The relatively close (ca. <50 million years old) relationships among morphologically diverse cereals native to environments that sample much of global geographic diversity make the cereals particularly attractive for comparative studies of plant genome evolution. Extensive germplasm resources, largely a byproduct of their economic importance, together with growing collections of defined mutants, provide foundations for a host of post-genomic studies to shed more light on the relationship between sequence and function in this important group. Using the rapidly growing capabilities of several informatics resources, genomic data from model cereals are likely to be leveraged tremendously in the study and improvement of a wide range of crop plants that sustain much of the world's population, including many which still lack primary genomic resources.

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Year:  2005        PMID: 16339361     DOI: 10.1101/gr.3725905

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  33 in total

1.  The evolution of genomes and language.

Authors:  Hong-Yu Zhang
Journal:  EMBO Rep       Date:  2006-08       Impact factor: 8.807

2.  Recent proliferation and translocation of pollen group 1 allergen genes in the maize genome.

Authors:  Elene R Valdivia; Javier Sampedro; Jonathan C Lamb; Surinder Chopra; Daniel J Cosgrove
Journal:  Plant Physiol       Date:  2007-01-12       Impact factor: 8.340

3.  Leveraging the rice genome sequence for monocot comparative and translational genomics.

Authors:  H C Lohithaswa; F A Feltus; H P Singh; C D Bacon; C D Bailey; A H Paterson
Journal:  Theor Appl Genet       Date:  2007-05-24       Impact factor: 5.699

4.  Genome size and GC content evolution of Festuca: ancestral expansion and subsequent reduction.

Authors:  Petr Smarda; Petr Bures; Lucie Horová; Bruno Foggi; Graziano Rossi
Journal:  Ann Bot       Date:  2007-12-24       Impact factor: 4.357

5.  A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress.

Authors:  Anca Macovei; Neha Vaid; Suresh Tula; Narendra Tuteja
Journal:  Plant Signal Behav       Date:  2012-08-17

6.  TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Authors:  Keiichi Mochida; Takuhiro Yoshida; Tetsuya Sakurai; Yasunari Ogihara; Kazuo Shinozaki
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

Review 7.  microRNAs as promising tools for improving stress tolerance in rice.

Authors:  Anca Macovei; Sarvajeet Singh Gill; Narendra Tuteja
Journal:  Plant Signal Behav       Date:  2012-08-20

8.  Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.

Authors:  Kankshita Swaminathan; Magdy S Alabady; Kranthi Varala; Emanuele De Paoli; Isaac Ho; Dan S Rokhsar; Aru K Arumuganathan; Ray Ming; Pamela J Green; Blake C Meyers; Stephen P Moose; Matthew E Hudson
Journal:  Genome Biol       Date:  2010-02-03       Impact factor: 13.583

9.  The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.

Authors:  Patrick P C Tam; Isabelle H Barrette-Ng; Dawn M Simon; Michael W C Tam; Amanda L Ang; Douglas G Muench
Journal:  BMC Plant Biol       Date:  2010-03-09       Impact factor: 4.215

Review 10.  Architectural evolution and its implications for domestication in grasses.

Authors:  Andrew Doust
Journal:  Ann Bot       Date:  2007-05-03       Impact factor: 4.357

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