Literature DB >> 16339358

Changing perspectives in yeast research nearly a decade after the genome sequence.

Kara Dolinski1, David Botstein.   

Abstract

Research with budding yeast (Saccharomyces cerevisiae) has been transformed by the publication, nearly a decade ago, of the entire genome DNA sequence. The introduction of this first eukaryotic genomic sequence changed the yeast research environment significantly, not just because of dramatic progress in technical means but also because the sequence made accessible a new class of scientific questions. A central goal of yeast research remains the determination of the biological role of every sequence feature in the yeast genome. The most remarkable change has been the shift in perspective from focus on individual genes and functionalities to a more global view of how the cellular networks and systems interact and function together to produce the highly evolved organism we see today.

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Year:  2005        PMID: 16339358     DOI: 10.1101/gr.3727505

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  12 in total

1.  Complex adaptive system models and the genetic analysis of plasma HDL-cholesterol concentration.

Authors:  Thomas J Rea; Christine M Brown; Charles F Sing
Journal:  Perspect Biol Med       Date:  2006       Impact factor: 1.416

Review 2.  Functional profiling of human fungal pathogen genomes.

Authors:  Alexi I Goranov; Hiten D Madhani
Journal:  Cold Spring Harb Perspect Med       Date:  2014-11-06       Impact factor: 6.915

3.  RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Authors:  Kok Hao Chen; Alistair N Boettiger; Jeffrey R Moffitt; Siyuan Wang; Xiaowei Zhuang
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

Review 4.  Yeast: an experimental organism for 21st Century biology.

Authors:  David Botstein; Gerald R Fink
Journal:  Genetics       Date:  2011-11       Impact factor: 4.562

5.  A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.

Authors:  Fumihito Miura; Noriko Kawaguchi; Jun Sese; Atsushi Toyoda; Masahira Hattori; Shinichi Morishita; Takashi Ito
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

6.  Evidence for consistent intragenic and intergenic interactions between SNP effects in the APOA1/C3/A4/A5 gene cluster.

Authors:  Sara C Hamon; Sharon L R Kardia; Eric Boerwinkle; Kiang Liu; Kathy L E Klos; Andrew G Clark; Charles F Sing
Journal:  Hum Hered       Date:  2006-05-19       Impact factor: 0.444

Review 7.  Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.

Authors:  Karen R Christie; Eurie L Hong; J Michael Cherry
Journal:  Trends Microbiol       Date:  2009-07-02       Impact factor: 17.079

8.  Evolutionary patterns of recently emerged animal duplogs.

Authors:  Kiyoshi Ezawa; Kazuho Ikeo; Takashi Gojobori; Naruya Saitou
Journal:  Genome Biol Evol       Date:  2011-08-22       Impact factor: 3.416

9.  Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell.

Authors:  Antonio Marco; Ignacio Marín
Journal:  BMC Syst Biol       Date:  2009-07-15

10.  Gene Ontology annotations at SGD: new data sources and annotation methods.

Authors:  Eurie L Hong; Rama Balakrishnan; Qing Dong; Karen R Christie; Julie Park; Gail Binkley; Maria C Costanzo; Selina S Dwight; Stacia R Engel; Dianna G Fisk; Jodi E Hirschman; Benjamin C Hitz; Cynthia J Krieger; Michael S Livstone; Stuart R Miyasato; Robert S Nash; Rose Oughtred; Marek S Skrzypek; Shuai Weng; Edith D Wong; Kathy K Zhu; Kara Dolinski; David Botstein; J Michael Cherry
Journal:  Nucleic Acids Res       Date:  2007-11-03       Impact factor: 16.971

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