Literature DB >> 16337784

Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies.

Andrew S Whiteley1, Mike Manefield, Tillmann Lueders.   

Abstract

Microbial ecologists have long sought to associate the transformation of compounds in the environment with the microbial clades responsible. The development of stable isotope probing (SIP) has made this possible in many ecological and biotechnological contexts. RNA-based SIP technologies represent a significant leap forward for culture-independent 'functional phylogeny' analyses, where specific consumption of a given compound carrying a (13)C signature can be associated with the small subunit ribosomal RNA molecules of the microbes that consume it. Recent advances have led to the unequivocal identification of microorganisms responsible for contaminant degradation in engineered systems, and to applications enhancing our understanding of carbon flow in terrestrial ecosystems.

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Year:  2005        PMID: 16337784     DOI: 10.1016/j.copbio.2005.11.002

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  17 in total

1.  Tools for the tract: understanding the functionality of the gastrointestinal tract.

Authors:  Petia Kovatcheva-Datchary; Erwin G Zoetendal; Koen Venema; Willem M de Vos; Hauke Smidt
Journal:  Therap Adv Gastroenterol       Date:  2009-07       Impact factor: 4.409

2.  Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis.

Authors:  Martin Rühl; Wolf-Dietrich Hardt; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

3.  Development of a fatty acid and RNA stable isotope probing-based method for tracking protist grazing on bacteria in wastewater.

Authors:  Steffen Kuppardt; Antonis Chatzinotas; Matthias Kästner
Journal:  Appl Environ Microbiol       Date:  2010-10-29       Impact factor: 4.792

4.  Identification of bacterial micropredators distinctively active in a soil microbial food web.

Authors:  Tillmann Lueders; Reimo Kindler; Anja Miltner; Michael W Friedrich; Matthias Kaestner
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

Review 5.  Molecular ecology techniques for the study of aerobic methanotrophs.

Authors:  Ian R McDonald; Levente Bodrossy; Yin Chen; J Colin Murrell
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

Review 6.  Stable isotope probing in the metagenomics era: a bridge towards improved bioremediation.

Authors:  Ondrej Uhlik; Mary-Cathrine Leewis; Michal Strejcek; Lucie Musilova; Martina Mackova; Mary Beth Leigh; Tomas Macek
Journal:  Biotechnol Adv       Date:  2012-09-26       Impact factor: 14.227

7.  Microbial rRNA Synthesis and Growth Compared through Quantitative Stable Isotope Probing with H218O.

Authors:  Katerina Papp; Bruce A Hungate; Egbert Schwartz
Journal:  Appl Environ Microbiol       Date:  2018-04-02       Impact factor: 4.792

8.  Detection and Capturing of (14)C Radioactively-Labeled Small Subunit rRNA from Mixed Microbial Communities of a Microbial Mat Using Magnetic Beads.

Authors:  Raeid M M Abed
Journal:  Indian J Microbiol       Date:  2011-10-28       Impact factor: 2.461

9.  Diversity of anaerobic microorganisms involved in long-chain fatty acid degradation in methanogenic sludges as revealed by RNA-based stable isotope probing.

Authors:  Masashi Hatamoto; Hiroyuki Imachi; Yuto Yashiro; Akiyoshi Ohashi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2007-05-04       Impact factor: 4.792

10.  Functional soil microbiome: belowground solutions to an aboveground problem.

Authors:  Venkatachalam Lakshmanan; Gopinath Selvaraj; Harsh P Bais
Journal:  Plant Physiol       Date:  2014-07-24       Impact factor: 8.340

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