Literature DB >> 16337126

Nascent peptide in the "birth canal" of the ribosome.

Alexander S Mankin1.   

Abstract

All proteins assembled by the ribosome must pass through the nascent-peptide exit tunnel. Some nascent peptides can specifically interact with the tunnel and affect the functions of the ribosome. The molecular mechanisms of such interactions and of the ribosome response are currently unknown. However, a recent study has revealed elements of the tunnel that might be involved in sensing the nascent-peptide sequence.

Mesh:

Substances:

Year:  2005        PMID: 16337126     DOI: 10.1016/j.tibs.2005.11.007

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  19 in total

1.  Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate.

Authors:  Devaki A Kelkar; Amardeep Khushoo; Zhongying Yang; William R Skach
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

2.  Side-chain recognition and gating in the ribosome exit tunnel.

Authors:  Paula M Petrone; Christopher D Snow; Del Lucent; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

Review 3.  The ribosome: a metabolite-responsive transcription regulator.

Authors:  Valley Stewart
Journal:  J Bacteriol       Date:  2008-05-16       Impact factor: 3.490

4.  Effects on translation pausing of alterations in protein and RNA components of the ribosome exit tunnel.

Authors:  Marlon G Lawrence; Lasse Lindahl; Janice M Zengel
Journal:  J Bacteriol       Date:  2008-06-27       Impact factor: 3.490

5.  Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli.

Authors:  Fernando Garza-Sánchez; Jennifer G Gin; Christopher S Hayes
Journal:  J Mol Biol       Date:  2008-03-06       Impact factor: 5.469

6.  Arginine changes the conformation of the arginine attenuator peptide relative to the ribosome tunnel.

Authors:  Cheng Wu; Jiajie Wei; Pen-Jen Lin; Liwei Tu; Carol Deutsch; Arthur E Johnson; Matthew S Sachs
Journal:  J Mol Biol       Date:  2012-01-05       Impact factor: 5.469

7.  Amino acid sequence repertoire of the bacterial proteome and the occurrence of untranslatable sequences.

Authors:  Sharon Penias Navon; Guy Kornberg; Jin Chen; Tali Schwartzman; Albert Tsai; Elisabetta Viani Puglisi; Joseph D Puglisi; Noam Adir
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-15       Impact factor: 11.205

8.  Interaction of nascent chains with the ribosomal tunnel proteins Rpl4, Rpl17, and Rpl39 of Saccharomyces cerevisiae.

Authors:  Ying Zhang; Tina Wölfle; Sabine Rospert
Journal:  J Biol Chem       Date:  2013-09-26       Impact factor: 5.157

9.  The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA.

Authors:  Seok-Ming Toh; Liqun Xiong; Taeok Bae; Alexander S Mankin
Journal:  RNA       Date:  2007-11-19       Impact factor: 4.942

10.  A multiscale approach to sampling nascent peptide chains in the ribosomal exit tunnel.

Authors:  V A Voelz; P Petrone; V S Pande
Journal:  Pac Symp Biocomput       Date:  2009
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.