Literature DB >> 16325207

Reconstructing pedigrees: a combinatorial perspective.

Mike Steel1, Jotun Hein.   

Abstract

A pedigree is a directed graph that displays the relationship between individuals according to their parentage. We derive a combinatorial result that shows how any pedigree-up to individuals who have no extant (present-day) ancestors-can be reconstructed from (sex-labelled) pedigrees that describe the ancestry of single extant individuals and pairs of extant individuals. Furthermore, this reconstruction can be done in polynomial time. We also provide an example to show that the corresponding reconstruction result does not hold for pedigrees that are not sex-labelled. We then show how any pedigree can also be reconstructed from two functions that just describe certain circuits in the pedigree. Finally, we obtain an enumeration result for pedigrees that is relevant to the question of how many segregating sites are needed to reconstruct pedigrees.

Mesh:

Year:  2005        PMID: 16325207     DOI: 10.1016/j.jtbi.2005.09.026

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  7 in total

1.  Reconstructing pedigrees: some identifiability questions for a recombination-mutation model.

Authors:  Bhalchandra D Thatte
Journal:  J Math Biol       Date:  2012-01-14       Impact factor: 2.259

Review 2.  Identity by descent: variation in meiosis, across genomes, and in populations.

Authors:  Elizabeth A Thompson
Journal:  Genetics       Date:  2013-06       Impact factor: 4.562

3.  Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo.

Authors:  Amy Ko; Rasmus Nielsen
Journal:  Genetics       Date:  2019-05-22       Impact factor: 4.562

4.  Isomorphism and similarity for 2-generation pedigrees.

Authors:  Haitao Jiang; Guohui Lin; Weitian Tong; Daming Zhu; Binhai Zhu
Journal:  BMC Bioinformatics       Date:  2015-03-18       Impact factor: 3.169

5.  Composite likelihood method for inferring local pedigrees.

Authors:  Amy Ko; Rasmus Nielsen
Journal:  PLoS Genet       Date:  2017-08-21       Impact factor: 5.917

6.  FRANz: reconstruction of wild multi-generation pedigrees.

Authors:  Markus Riester; Peter F Stadler; Konstantin Klemm
Journal:  Bioinformatics       Date:  2009-02-08       Impact factor: 6.937

7.  Historical pedigree reconstruction from extant populations using PArtitioning of RElatives (PREPARE).

Authors:  Doron Shem-Tov; Eran Halperin
Journal:  PLoS Comput Biol       Date:  2014-06-19       Impact factor: 4.475

  7 in total

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