Literature DB >> 16325205

The standard genetic code enhances adaptive evolution of proteins.

Wen Zhu1, Stephen Freeland.   

Abstract

The standard genetic code, by which most organisms translate genetic material into protein metabolism, is non-randomly organized. The Error Minimization hypothesis interprets this non-randomness as an adaptation, proposing that natural selection produced a pattern of codon assignments that buffers genomes against the impact of mutations. Indeed, on the average any given point mutation has a lesser effect on the chemical properties of the utilized amino acid than expected by chance. Might it also, however, be the case that the non-random nature of the code effects the rate of adaptive evolution? To investigate this, here we develop population genetic simulations to test the rate of adaptive gene evolution under different genetic codes. We identify two independent properties of a genetic code that profoundly influence the speed of adaptive evolution. Noting that the standard genetic code exhibits both, we offer a new insight into the effects of the "error minimizing" code: such a code enhances the efficacy of adaptive sequence evolution.

Mesh:

Substances:

Year:  2005        PMID: 16325205     DOI: 10.1016/j.jtbi.2005.07.012

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  13 in total

1.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

2.  On primordial sense-antisense coding.

Authors:  Andrei S Rodin; Sergei N Rodin; Charles W Carter
Journal:  J Mol Evol       Date:  2009-12-03       Impact factor: 2.395

3.  The Standard Genetic Code Facilitates Exploration of the Space of Functional Nucleotide Sequences.

Authors:  Shubham Tripathi; Michael W Deem
Journal:  J Mol Evol       Date:  2018-06-29       Impact factor: 2.395

4.  Revisiting the physico-chemical hypothesis of code origin: an analysis based on code-sequence coevolution in a finite population.

Authors:  Ashutosh Vishwa Bandhu; Neha Aggarwal; Supratim Sengupta
Journal:  Orig Life Evol Biosph       Date:  2014-02-06       Impact factor: 1.950

Review 5.  Origin and evolution of the genetic code: the universal enigma.

Authors:  Eugene V Koonin; Artem S Novozhilov
Journal:  IUBMB Life       Date:  2009-02       Impact factor: 3.885

6.  The origin and evolution of tRNA inferred from phylogenetic analysis of structure.

Authors:  Feng-Jie Sun; Gustavo Caetano-Anollés
Journal:  J Mol Evol       Date:  2007-12-04       Impact factor: 2.395

7.  Do universal codon-usage patterns minimize the effects of mutation and translation error?

Authors:  Roberto Marquez; Sandra Smit; Rob Knight
Journal:  Genome Biol       Date:  2005-10-19       Impact factor: 13.583

8.  Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint.

Authors:  Steven E Massey
Journal:  Life (Basel)       Date:  2015-04-24

9.  The genetic code constrains yet facilitates Darwinian evolution.

Authors:  Elad Firnberg; Marc Ostermeier
Journal:  Nucleic Acids Res       Date:  2013-06-10       Impact factor: 16.971

10.  Amino acid properties conserved in molecular evolution.

Authors:  Witold R Rudnicki; Teresa Mroczek; Paweł Cudek
Journal:  PLoS One       Date:  2014-06-26       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.