Literature DB >> 1632496

Extending CD spectra of proteins to 168 nm improves the analysis for secondary structures.

A Toumadje1, S W Alcorn, W C Johnson.   

Abstract

The CD spectra for 10 proteins with known secondary structure have been extended from 178 to 168 nm. Combined with the data for 6 other proteins investigated previously, this produces a basis set of 16 proteins, which can be used to analyze CD spectra for secondary structure. Extending the spectra adds another CD band to the data and increases the information content from the equivalent of five to six. Analyzing the CD for each of the 16 proteins in the basis set with the 15 other proteins shows a modest improvement in the prediction of secondary structure with the extended CD spectra.

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Year:  1992        PMID: 1632496     DOI: 10.1016/0003-2697(92)90473-k

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  21 in total

1.  Conformational change in elastase following complexation with alpha1-proteinase inhibitor: a CD investigation.

Authors:  Jean-Alain Bousquet; Jérôme Duranton; Yves Mély; Joseph G Bieth
Journal:  Biochem J       Date:  2003-02-15       Impact factor: 3.857

2.  Structural composition of betaI- and betaII-proteins.

Authors:  Narasimha Sreerama; Robert W Woody
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

3.  Analyses of circular dichroism spectra of membrane proteins.

Authors:  B A Wallace; J G Lees; A J W Orry; A Lobley; Robert W Janes
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

4.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  Limited proteolysis of bovine alpha-lactalbumin: isolation and characterization of protein domains.

Authors:  P Polverino de Laureto; E Scaramella; M Frigo; F G Wondrich; V De Filippis; M Zambonin; A Fontana
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

6.  Using circular dichroism spectra to estimate protein secondary structure.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  Requirements for the formation of membrane pores by the reovirus myristoylated micro1N peptide.

Authors:  Lan Zhang; Melina A Agosto; Tijana Ivanovic; David S King; Max L Nibert; Stephen C Harrison
Journal:  J Virol       Date:  2009-05-13       Impact factor: 5.103

8.  Comparison of and limits of accuracy for statistical analyses of vibrational and electronic circular dichroism spectra in terms of correlations to and predictions of protein secondary structure.

Authors:  P Pancoska; E Bitto; V Janota; M Urbanova; V P Gupta; T A Keiderling
Journal:  Protein Sci       Date:  1995-07       Impact factor: 6.725

9.  A synthetic peptide blocking the apolipoprotein E/beta-amyloid binding mitigates beta-amyloid toxicity and fibril formation in vitro and reduces beta-amyloid plaques in transgenic mice.

Authors:  Marcin Sadowski; Joanna Pankiewicz; Henrieta Scholtzova; James A Ripellino; Yongsheng Li; Stephen D Schmidt; Paul M Mathews; John D Fryer; David M Holtzman; Einar M Sigurdsson; Thomas Wisniewski
Journal:  Am J Pathol       Date:  2004-09       Impact factor: 4.307

10.  Structural changes in factor VIIa induced by Ca2+ and tissue factor studied using circular dichroism spectroscopy.

Authors:  P O Freskgård; O H Olsen; E Persson
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

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