Literature DB >> 16323020

The active site of the [FeFe]-hydrogenase from Desulfovibrio desulfuricans. I. Light sensitivity and magnetic hyperfine interactions as observed by electron paramagnetic resonance.

Simon P J Albracht1, Winfried Roseboom, E Claude Hatchikian.   

Abstract

The hydrogen-activating cluster (H cluster) in [FeFe]-hydrogenases consists of two moieties. The [2Fe]H subcluster is a (L)(CO)(CN)Fe(mu-RS2)(mu-CO)Fe(CysS)(CO)(CN) centre. The Cys-bound Fe is called Fe1, the other iron Fe2. The Cys-thiol forms a bridge to a [4Fe-4S] cluster, the [4Fe-4S]H subcluster. We report that electron paramagnetic resonance (EPR) spectra of the 57Fe-enriched enzyme from Desulfovibrio desulfuricans in the H(ox)-CO state are consistent with a magnetic hyperfine interaction of the unpaired spin with all six Fe atoms of the H cluster. In contrast to the inactive aerobic enzyme, the active enzyme is easily destroyed by light. The [2Fe]H subcluster in some enzyme molecules loses CO by photolysis, whereupon other molecules firmly bind the released CO to form the H(ox)-CO state giving rise to the so-called axial 2.06 EPR signal. Though not destroyed by light, the H(ox)-CO state is affected by it. As demonstrated in the accompanying paper [49] two of the intrinsic COs, both bound to Fe2, can be exchanged by extrinsic 13CO during illumination at 2 degrees C. We found that only one of the three 13COs, the one at the extrinsic position, gives an EPR-detectable isotropic superhyperfine interaction of 0.6 mT. At 30 K both the inhibiting extrinsic CO bound to Fe2 and one more CO can be photolysed. EPR spectra of the photolysed products are consistent with a 3d7 system of Fe with the formal oxidation state +1. The damaged enzyme shows a light-sensitive g = 5 signal which is ascribed to an S = 3/2 form of the [2Fe](H) subcluster. The light sensitivity of the enzyme explains the occurrence of the g = 5 signal and the axial 2.06 signal in published EPR spectra of nearly all preparations studied thus far.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16323020     DOI: 10.1007/s00775-005-0039-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  50 in total

Review 1.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

2.  Synthesis of the H-cluster framework of iron-only hydrogenase.

Authors:  Cédric Tard; Xiaoming Liu; Saad K Ibrahim; Maurizio Bruschi; Luca De Gioia; Siân C Davies; Xin Yang; Lai-Sheng Wang; Gary Sawers; Christopher J Pickett
Journal:  Nature       Date:  2005-02-10       Impact factor: 49.962

3.  Infrared studies of the CO-inhibited form of the Fe-only hydrogenase from Clostridium pasteurianum I: examination of its light sensitivity at cryogenic temperatures.

Authors:  Zhujun Chen; Brian J Lemon; Shan Huang; Derrick J Swartz; John W Peters; Kimberly A Bagley
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

4.  New insights, ideas and unanswered questions concerning iron-sulfur clusters in mitochondria.

Authors:  H Beinert; S P Albracht
Journal:  Biochim Biophys Acta       Date:  1982-12-31

5.  Function of H2-forming methylenetetrahydromethanopterin dehydrogenase from methanobacterium thermoautotrophicum in coenzyme F420 reduction with H2

Authors: 
Journal:  Arch Microbiol       Date:  1998-03       Impact factor: 2.552

6.  On the novel H2-activating iron-sulfur center of the "Fe-only" hydrogenases.

Authors:  M W Adams; M K Johnson; I C Zambrano; L E Mortenson
Journal:  Biochimie       Date:  1986-01       Impact factor: 4.079

7.  Electron paramagnetic resonance studies of the low temperature photolytic behavior of oxidized hydrogenase I from Clostridium pasteurianum.

Authors:  A T Kowal; M W Adams; M K Johnson
Journal:  J Biol Chem       Date:  1989-03-15       Impact factor: 5.157

8.  Characterization of the nickel-iron periplasmic hydrogenase from Desulfovibrio fructosovorans.

Authors:  C E Hatchikian; A S Traore; V M Fernandez; R Cammack
Journal:  Eur J Biochem       Date:  1990-02-14

9.  EPR-detectable redox centers of the periplasmic hydrogenase from Desulfovibrio vulgaris.

Authors:  D S Patil; J J Moura; S H He; M Teixeira; B C Prickril; D V DerVartanian; H D Peck; J LeGall; B H Huynh
Journal:  J Biol Chem       Date:  1988-12-15       Impact factor: 5.157

Review 10.  Molecular biology of microbial hydrogenases.

Authors:  P M Vignais; A Colbeau
Journal:  Curr Issues Mol Biol       Date:  2004-07       Impact factor: 2.081

View more
  16 in total

1.  Unsaturated, mixed-valence diiron dithiolate model for the H(ox) state of the [FeFe] hydrogenase.

Authors:  Aaron K Justice; Thomas B Rauchfuss; Scott R Wilson
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  Spin distribution of the H-cluster in the H(ox)-CO state of the [FeFe] hydrogenase from Desulfovibrio desulfuricans: HYSCORE and ENDOR study of (14)N and (13)C nuclear interactions.

Authors:  Alexey Silakov; Brian Wenk; Eduard Reijerse; Simon P J Albracht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2008-11-15       Impact factor: 3.358

3.  EPR/ENDOR, Mössbauer, and quantum-chemical investigations of diiron complexes mimicking the active oxidized state of [FeFe]hydrogenase.

Authors:  Alexey Silakov; Matthew T Olsen; Stephen Sproules; Eduard J Reijerse; Thomas B Rauchfuss; Wolfgang Lubitz
Journal:  Inorg Chem       Date:  2012-07-16       Impact factor: 5.165

4.  Importance of the protein framework for catalytic activity of [FeFe]-hydrogenases.

Authors:  Philipp Knörzer; Alexey Silakov; Carina E Foster; Fraser A Armstrong; Wolfgang Lubitz; Thomas Happe
Journal:  J Biol Chem       Date:  2011-11-22       Impact factor: 5.157

5.  Characterization of a HoxEFUYH type of [NiFe] hydrogenase from Allochromatium vinosum and some EPR and IR properties of the hydrogenase module.

Authors:  Minnan Long; Jingjing Liu; Zhifeng Chen; Boris Bleijlevens; Winfried Roseboom; Simon P J Albracht
Journal:  J Biol Inorg Chem       Date:  2006-09-13       Impact factor: 3.358

6.  Does the environment around the H-cluster allow coordination of the pendant amine to the catalytic iron center in [FeFe] hydrogenases? Answers from theory.

Authors:  Toshiko Miyake; Maurizio Bruschi; Ugo Cosentino; Carole Baffert; Vincent Fourmond; Christophe Léger; Giorgio Moro; Luca De Gioia; Claudio Greco
Journal:  J Biol Inorg Chem       Date:  2013-06-23       Impact factor: 3.358

7.  Characterization of a cyanobacterial-like uptake [NiFe] hydrogenase: EPR and FTIR spectroscopic studies of the enzyme from Acidithiobacillus ferrooxidans.

Authors:  Olga Schröder; Boris Bleijlevens; Thyra E de Jongh; Zhujun Chen; Tianshu Li; Jörg Fischer; Jochen Förster; Cornelius G Friedrich; Kimberly A Bagley; Simon P J Albracht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2006-11-03       Impact factor: 3.358

Review 8.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

9.  Characterization of a putative sensory [FeFe]-hydrogenase provides new insight into the role of the active site architecture.

Authors:  Henrik Land; Alina Sekretareva; Ping Huang; Holly J Redman; Brigitta Németh; Nakia Polidori; Lívia S Mészáros; Moritz Senger; Sven T Stripp; Gustav Berggren
Journal:  Chem Sci       Date:  2020-09-21       Impact factor: 9.825

10.  An innovative cloning platform enables large-scale production and maturation of an oxygen-tolerant [NiFe]-hydrogenase from Cupriavidus necator in Escherichia coli.

Authors:  Johannes Schiffels; Olaf Pinkenburg; Maximilian Schelden; El-Hussiny A A Aboulnaga; Marcus E M Baumann; Thorsten Selmer
Journal:  PLoS One       Date:  2013-07-05       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.