Literature DB >> 16322564

A simple electrostatic switch important in the activation of type I protein kinase A by cyclic AMP.

Dominico Vigil1, Jung-Hsin Lin, Christoph A Sotriffer, Juniper K Pennypacker, J Andrew McCammon, Susan S Taylor.   

Abstract

Cyclic AMP activates protein kinase A by binding to an inhibitory regulatory (R) subunit and releasing inhibition of the catalytic (C) subunit. Even though crystal structures of regulatory and catalytic subunits have been solved, the precise molecular mechanism by which cyclic AMP activates the kinase remains unknown. The dynamic properties of the cAMP binding domain in the absence of cAMP or C-subunit are also unknown. Here we report molecular-dynamics simulations and mutational studies of the RIalpha R-subunit that identify the C-helix as a highly dynamic switch which relays cAMP binding to the helical C-subunit binding regions. Furthermore, we identify an important salt bridge which links cAMP binding directly to the C-helix that is necessary for normal activation. Additional mutations show that a hydrophobic "hinge" region is not as critical for the cross-talk in PKA as it is in the homologous EPAC protein, illustrating how cAMP can control diverse functions using the evolutionarily conserved cAMP-binding domains.

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Year:  2005        PMID: 16322564      PMCID: PMC2242374          DOI: 10.1110/ps.051723606

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  26 in total

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Authors:  D A Johnson; P Akamine; E Radzio-Andzelm; M Madhusudan; S S Taylor
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

Review 2.  Physiological substrates of cAMP-dependent protein kinase.

Authors:  J B Shabb
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

3.  Classification and phylogenetic analysis of the cAMP-dependent protein kinase regulatory subunit family.

Authors:  Jaume M Canaves; Susan S Taylor
Journal:  J Mol Evol       Date:  2002-01       Impact factor: 2.395

4.  Structure and regulation of the cAMP-binding domains of Epac2.

Authors:  Holger Rehmann; Balaji Prakash; Eva Wolf; Alma Rueppel; Johan de Rooij; Johannes L Bos; Alfred Wittinghofer
Journal:  Nat Struct Biol       Date:  2003-01

5.  RIalpha subunit of PKA: a cAMP-free structure reveals a hydrophobic capping mechanism for docking cAMP into site B.

Authors:  Jian Wu; Simon Brown; Nguyen-Huu Xuong; Susan S Taylor
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

6.  Structural basis of ligand activation in a cyclic nucleotide regulated potassium channel.

Authors:  Gina M Clayton; William R Silverman; Lise Heginbotham; João H Morais-Cabral
Journal:  Cell       Date:  2004-11-24       Impact factor: 41.582

7.  Consequences of cAMP and catalytic-subunit binding on the flexibility of the A-kinase regulatory subunit.

Authors:  F Li; M Gangal; J M Jones; J Deich; K E Lovett; S S Taylor; D A Johnson
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

8.  Molecular basis for regulatory subunit diversity in cAMP-dependent protein kinase: crystal structure of the type II beta regulatory subunit.

Authors:  T C Diller; N H Xuong; S S Taylor
Journal:  Structure       Date:  2001-01-10       Impact factor: 5.006

9.  Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein.

Authors:  Aichun Dong; Jedrzej M Malecki; Lucy Lee; John F Carpenter; J Ching Lee
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

10.  Crystal structures of RIalpha subunit of cyclic adenosine 5'-monophosphate (cAMP)-dependent protein kinase complexed with (Rp)-adenosine 3',5'-cyclic monophosphothioate and (Sp)-adenosine 3',5'-cyclic monophosphothioate, the phosphothioate analogues of cAMP.

Authors:  Jian Wu; John M Jones; Xuong Nguyen-Huu; Lynn F Ten Eyck; Susan S Taylor
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

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  11 in total

1.  An electrostatic network and long-range regulation of Src kinases.

Authors:  Elif Ozkirimli; Shalini S Yadav; W Todd Miller; Carol Beth Post
Journal:  Protein Sci       Date:  2008-08-07       Impact factor: 6.725

2.  Unidirectional allostery in the regulatory subunit RIα facilitates efficient deactivation of protein kinase A.

Authors:  Cong Guo; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

3.  cAMP activation of PKA defines an ancient signaling mechanism.

Authors:  Rahul Das; Veronica Esposito; Mona Abu-Abed; Ganesh S Anand; Susan S Taylor; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-20       Impact factor: 11.205

4.  Electrostatic changes in phosphorylase kinase induced by its obligatory allosteric activator Ca2+.

Authors:  Timothy S Priddy; C Russell Middaugh; Gerald M Carlson
Journal:  Protein Sci       Date:  2007-03       Impact factor: 6.725

5.  Dissecting the cAMP-inducible allosteric switch in protein kinase A RIalpha.

Authors:  Timothy J Sjoberg; Alexandr P Kornev; Susan S Taylor
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

6.  Gating of HCN channels by cyclic nucleotides: residue contacts that underlie ligand binding, selectivity, and efficacy.

Authors:  Lei Zhou; Steven A Siegelbaum
Journal:  Structure       Date:  2007-06       Impact factor: 5.006

7.  Structure and rearrangements in the carboxy-terminal region of SpIH channels.

Authors:  Galen E Flynn; Kevin D Black; Leon D Islas; Banumathi Sankaran; William N Zagotta
Journal:  Structure       Date:  2007-06       Impact factor: 5.006

8.  Cyclic AMP- and (Rp)-cAMPS-induced conformational changes in a complex of the catalytic and regulatory (RI{alpha}) subunits of cyclic AMP-dependent protein kinase.

Authors:  Ganesh S Anand; Srinath Krishnamurthy; Tanushree Bishnoi; Alexandr Kornev; Susan S Taylor; David A Johnson
Journal:  Mol Cell Proteomics       Date:  2010-02-18       Impact factor: 5.911

9.  Co-crystal structures of PKG Iβ (92-227) with cGMP and cAMP reveal the molecular details of cyclic-nucleotide binding.

Authors:  Jeong Joo Kim; Darren E Casteel; Gilbert Huang; Taek Hun Kwon; Ronnie Kuo Ren; Peter Zwart; Jeffrey J Headd; Nicholas Gene Brown; Dar-Chone Chow; Timothy Palzkill; Choel Kim
Journal:  PLoS One       Date:  2011-04-19       Impact factor: 3.240

10.  The regulatory subunit of PKA-I remains partially structured and undergoes β-aggregation upon thermal denaturation.

Authors:  Khanh K Dao; Angel L Pey; Anja Underhaug Gjerde; Knut Teigen; In-Ja L Byeon; Stein O Døskeland; Angela M Gronenborn; Aurora Martinez
Journal:  PLoS One       Date:  2011-03-04       Impact factor: 3.240

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