Literature DB >> 16316253

Strong solute-solute dispersive interactions in a protein-ligand complex.

Richard Malham1, Sarah Johnstone, Richard J Bingham, Elizabeth Barratt, Simon E V Phillips, Charles A Laughton, Steve W Homans.   

Abstract

The contributions of solute-solute dispersion interactions to binding thermodynamics have generally been thought to be small, due to the surmised equality between solute-solvent dispersion interactions prior to the interaction versus solute-solute dispersion interactions following the interaction. The thermodynamics of binding of primary alcohols to the major urinary protein (MUP-I) indicate that this general assumption is not justified. The enthalpy of binding becomes more favorable with increasing chain length, whereas the entropy of binding becomes less favorable, both parameters showing a linear dependence. Despite the hydrophobicity of the interacting species, these data show that binding is not dominated by the classical hydrophobic effect, but can be attributed to favorable ligand-protein dispersion interactions.

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Year:  2005        PMID: 16316253     DOI: 10.1021/ja055454g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  The paradoxical thermodynamic basis for the interaction of ethylene glycol, glycine, and sarcosine chains with bovine carbonic anhydrase II: an unexpected manifestation of enthalpy/entropy compensation.

Authors:  Vijay M Krishnamurthy; Brooks R Bohall; Vincent Semetey; George M Whitesides
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

2.  Ligand binding to protein-binding pockets with wet and dry regions.

Authors:  Lingle Wang; B J Berne; R A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

3.  High resolution X-ray structures of mouse major urinary protein nasal isoform in complex with pheromones.

Authors:  Samantha Perez-Miller; Qin Zou; Milos V Novotny; Thomas D Hurley
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

4.  Protein-ligand interactions: thermodynamic effects associated with increasing nonpolar surface area.

Authors:  James M Myslinski; John E DeLorbe; John H Clements; Stephen F Martin
Journal:  J Am Chem Soc       Date:  2011-10-27       Impact factor: 15.419

5.  Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms.

Authors:  Jason A Wagoner; Nathan A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-18       Impact factor: 11.205

6.  How much do van der Waals dispersion forces contribute to molecular recognition in solution?

Authors:  Lixu Yang; Catherine Adam; Gary S Nichol; Scott L Cockroft
Journal:  Nat Chem       Date:  2013-10-20       Impact factor: 24.427

7.  Protein-ligand interactions: probing the energetics of a putative cation-π interaction.

Authors:  James M Myslinski; John H Clements; Stephen F Martin
Journal:  Bioorg Med Chem Lett       Date:  2014-05-09       Impact factor: 2.823

8.  Mechanism of the hydrophobic effect in the biomolecular recognition of arylsulfonamides by carbonic anhydrase.

Authors:  Phillip W Snyder; Jasmin Mecinovic; Demetri T Moustakas; Samuel W Thomas; Michael Harder; Eric T Mack; Matthew R Lockett; Annie Héroux; Woody Sherman; George M Whitesides
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

9.  Specific and non-specific protein association in solution: computation of solvent effects and prediction of first-encounter modes for efficient configurational bias Monte Carlo simulations.

Authors:  Antonio Cardone; Harish Pant; Sergio A Hassan
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

10.  Comparison of entropic contributions to binding in a "hydrophilic" versus "hydrophobic" ligand-protein interaction.

Authors:  Neil R Syme; Caitriona Dennis; Agnieszka Bronowska; Guido C Paesen; Steve W Homans
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

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