Literature DB >> 16314916

Investigation of a Kubo-formula-based approach to estimate DNA conductance in an atomistic model.

E B Starikov1, S Tanaka, N Kurita, Y Sengoku, T Natsume, W Wenzel.   

Abstract

A novel approach to estimate DNA conductance based upon Kubo formula is presented and discussed. Using this approach, the effects of base pair mismatches, different conformational changes and base pair sequence on DNA electrical properties were investigated. The results were compared with the data from other methods. The new approach makes possible very fast estimation of conductance spectra for oligonucleotides with hundreds of base pairs and can easily be extended to treat arbitrary chemical modifications of DNA.

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Year:  2005        PMID： 16314916     DOI： 10.1140/epje/e2005-00047-4

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN： 1292-8941            Impact factor:   1.890


  11 in total

1.  Single-base mismatch detection based on charge transduction through DNA.

Authors:  S O Kelley; E M Boon; J K Barton; N M Jackson; M G Hill
Journal:  Nucleic Acids Res       Date:  1999-12-15       Impact factor: 16.971

2.  Band resonant tunneling in DNA molecules.

Authors:  M Hjort; S Stafström
Journal:  Phys Rev Lett       Date:  2001-11-08       Impact factor: 9.161

3.  Locating monovalent cations in the grooves of B-DNA.

Authors:  S B Howerton; C C Sines; D VanDerveer; L D Williams
Journal:  Biochemistry       Date:  2001-08-28       Impact factor: 3.162

4.  Metal-insulator transition in chains with correlated disorder.

Authors:  Pedro Carpena; Pedro Bernaola-Galván; Plamen Ch Ivanov; H Eugene Stanley
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

5.  Bifunctional DNA-gold nanoparticle conjugates as building blocks for the self-assembly of cross-linked particle layers.

Authors:  Christof M Niemeyer; Buelent Ceyhan; Michael Noyong; Ulrich Simon
Journal:  Biochem Biophys Res Commun       Date:  2003-11-28       Impact factor: 3.575

6.  Sequence dependent DNA-mediated conduction.

Authors:  Stephan Roche
Journal:  Phys Rev Lett       Date:  2003-09-03       Impact factor: 9.161

7.  Band-gap tunneling states in DNA.

Authors:  Hao Wang; James P Lewis; Otto F Sankey
Journal:  Phys Rev Lett       Date:  2004-06-28       Impact factor: 9.161

8.  Electrical conduction through poly(dA)-poly(dT) and poly(dG)-poly(dC) DNA molecules.

Authors:  K H Yoo; D H Ha; J O Lee; J W Park; J Kim; J J Kim; H Y Lee; T Kawai; H Y Choi
Journal:  Phys Rev Lett       Date:  2001-10-23       Impact factor: 9.161

9.  Crystal and molecular structure of d(CGTAGATCTACG) at 2.25 A resolution.

Authors:  G A Leonard; W N Hunter
Journal:  J Mol Biol       Date:  1993-11-05       Impact factor: 5.469

10.  Metal-insulator transition in chains with correlated disorder.

Authors:  Pedro Carpena; Pedro Bernaola-Galván; Plamen Ch Ivanov; H Eugene Stanley
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962
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  2 in total

1.  A combined DFT/Green's function study on electrical conductivity through DNA duplex between Au electrodes.

Authors:  Takayuki Tsukamoto; Yasuyuki Ishikawa; Yasuo Sengoku; Noriyuki Kurita
Journal:  Chem Phys Lett       Date:  2009-06-04       Impact factor: 2.328

Review 2.  Applications of biomaterials to liquid crystals.

Authors:  Kazuki Iwabata; Urara Sugai; Yasutaka Seki; Hirokazu Furue; Kengo Sakaguchi
Journal:  Molecules       Date:  2013-04-19       Impact factor: 4.411
  2 in total

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