Literature DB >> 16314260

In vitro coupled transcription splicing.

Barbara J Natalizio1, Mariano A Garcia-Blanco.   

Abstract

Many convincing studies published in recent years strongly support coupling of transcription and pre-mRNA processing. Despite key advances in our understanding of these processes, there is a lack of a robust in vitro system in which to study the mechanism of this coupling for complex pre-mRNAs. Here, we describe an in vitro system capable of transcribing and splicing complex transcripts with three and four exons. We also demonstrate how the system can be used to study exon silencing in vitro. We believe that this system will be a useful tool to study the mechanisms that mediate the coupling of transcription and pre-mRNA processing.

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Year:  2005        PMID: 16314260     DOI: 10.1016/j.ymeth.2005.07.013

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  11 in total

1.  Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage.

Authors:  Frank Rigo; Harold G Martinson
Journal:  Mol Cell Biol       Date:  2007-10-29       Impact factor: 4.272

2.  Concurrent splicing and transcription are not sufficient to enhance splicing efficiency.

Authors:  Denis Lazarev; James L Manley
Journal:  RNA       Date:  2007-07-13       Impact factor: 4.942

3.  The Carboxyl-terminal Domain of RNA Polymerase II Is Not Sufficient to Enhance the Efficiency of Pre-mRNA Capping or Splicing in the Context of a Different Polymerase.

Authors:  Barbara J Natalizio; Nicole D Robson-Dixon; Mariano A Garcia-Blanco
Journal:  J Biol Chem       Date:  2009-01-28       Impact factor: 5.157

Review 4.  Functional integration of transcriptional and RNA processing machineries.

Authors:  Shatakshi Pandit; Dong Wang; Xiang-Dong Fu
Journal:  Curr Opin Cell Biol       Date:  2008-04-22       Impact factor: 8.382

5.  FUS functions in coupling transcription to splicing by mediating an interaction between RNAP II and U1 snRNP.

Authors:  Yong Yu; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

Review 6.  Pre-mRNA splicing during transcription in the mammalian system.

Authors:  Amy Pandya-Jones
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-05-02       Impact factor: 9.957

7.  In vitro systems for coupling RNAP II transcription to splicing and polyadenylation.

Authors:  Eric G Folco; Robin Reed
Journal:  Methods Mol Biol       Date:  2014

8.  Identification of an intronic splicing enhancer essential for the inclusion of FGFR2 exon IIIc.

Authors:  Puneet Seth; Heather B Miller; Erika L Lasda; James L Pearson; Mariano A Garcia-Blanco
Journal:  J Biol Chem       Date:  2008-02-06       Impact factor: 5.157

9.  Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns.

Authors:  Martin J Hicks; Chin-Rang Yang; Matthew V Kotlajich; Klemens J Hertel
Journal:  PLoS Biol       Date:  2006-05-02       Impact factor: 8.029

10.  RNA Polymerase II Elongation at the Crossroads of Transcription and Alternative Splicing.

Authors:  Manuel de la Mata; Manuel J Muñoz; Mariano Alló; Juan Pablo Fededa; Ignacio E Schor; Alberto R Kornblihtt
Journal:  Genet Res Int       Date:  2011-09-20
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