Literature DB >> 16314071

Single linkage group per chromosome genetic linkage map for the horse, based on two three-generation, full-sibling, crossbred horse reference families.

June E Swinburne1, Mike Boursnell, Gemma Hill, Louise Pettitt, Twink Allen, Bhanu Chowdhary, Telhisa Hasegawa, Masahiko Kurosawa, Tosso Leeb, Suguru Mashima, James R Mickelson, Terje Raudsepp, Teruaki Tozaki, Matthew Binns.   

Abstract

A genetic linkage map of the horse consisting of 742 markers, which comprises a single linkage group for each of the autosomes and the X chromosome, is presented. The map has been generated from two three-generation full-sibling reference families, sired by the same stallion, in which there are 61 individuals in the F2 generation. Each linkage group has been assigned to a chromosome and oriented with reference to markers mapped by fluorescence in situ hybridization. The average interval between markers is 3.7 cM and the linkage groups collectively span 2772 cM. The 742 markers comprise 734 microsatellite and 8 gene-based markers. The utility of the microsatellite markers for comparative mapping has been significantly enhanced by comparing their flanking sequences with the human genome sequence; this enabled conserved segments between human and horse to be identified. The new map provides a valuable resource for genetically mapping traits of interest in the horse.

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Year:  2005        PMID: 16314071     DOI: 10.1016/j.ygeno.2005.09.001

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  20 in total

1.  A domestic cat X chromosome linkage map and the sex-linked orange locus: mapping of orange, multiple origins and epistasis over nonagouti.

Authors:  Anne Schmidt-Küntzel; George Nelson; Victor A David; Alejandro A Schäffer; Eduardo Eizirik; Melody E Roelke; James S Kehler; Steven S Hannah; Stephen J O'Brien; Marilyn Menotti-Raymond
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

2.  Gametic phase disequilibrium between the syntenic multiallelic HTG4 and HMS3 markers widely used for parentage testing in Thoroughbred horses.

Authors:  Filipe Brum Machado; Luana de Vasconcellos Machado; Cynthia Rachid Bydlowski; Sergio Paulo Bydlowski; Enrique Medina-Acosta
Journal:  Mol Biol Rep       Date:  2011-05-24       Impact factor: 2.316

Review 3.  Applied equine genetics.

Authors:  C J Finno; D L Bannasch
Journal:  Equine Vet J       Date:  2014-06-25       Impact factor: 2.888

4.  An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.

Authors:  Marilyn Menotti-Raymond; Victor A David; Alejandro A Schäffer; James F Tomlin; Eduardo Eizirik; Cornel Phillip; David Wells; Joan U Pontius; Steven S Hannah; Stephen J O'Brien
Journal:  Genomics       Date:  2008-12-13       Impact factor: 5.736

5.  A whole-genome scan for recurrent airway obstruction in Warmblood sport horses indicates two positional candidate regions.

Authors:  June E Swinburne; Helen Bogle; Jolanta Klukowska-Rötzler; Michaela Drögemüller; Tosso Leeb; Elizabeth Temperton; Gaudenz Dolf; Vincent Gerber
Journal:  Mamm Genome       Date:  2009-08       Impact factor: 2.957

Review 6.  The horse genome derby: racing from map to whole genome sequence.

Authors:  Bhanu P Chowdhary; Terje Raudsepp
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

7.  A 4,103 marker integrated physical and comparative map of the horse genome.

Authors:  T Raudsepp; A Gustafson-Seabury; K Durkin; M L Wagner; G Goh; C M Seabury; C Brinkmeyer-Langford; E-J Lee; R Agarwala; E Stallknecht-Rice; A A Schäffer; L C Skow; T Tozaki; H Yasue; M C T Penedo; L A Lyons; K A Khazanehdari; M M Binns; J N MacLeod; O Distl; G Guérin; T Leeb; J R Mickelson; B P Chowdhary
Journal:  Cytogenet Genome Res       Date:  2008-10-14       Impact factor: 1.636

8.  Genome-wide search for microsatellite markers associated with radiologic alterations in the navicular bone of Hanoverian warmblood horses.

Authors:  Ulrike S Diesterbeck; Bodo Hertsch; Ottmar Distl
Journal:  Mamm Genome       Date:  2007-06-06       Impact factor: 2.957

9.  Genome-wide search for markers associated with osteochondrosis in Hanoverian warmblood horses.

Authors:  Claudia Dierks; Kathrin Löhring; Virginie Lampe; Catherine Wittwer; Cord Drögemüller; Ottmar Distl
Journal:  Mamm Genome       Date:  2007-09-29       Impact factor: 2.957

10.  Whole-genome scan identifies quantitative trait loci for chronic pastern dermatitis in German draft horses.

Authors:  E Henrike Mittmann; Stefanie Mömke; Ottmar Distl
Journal:  Mamm Genome       Date:  2009-12-29       Impact factor: 2.957

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