Literature DB >> 16305225

L-canavanine is a time-controlled mechanism-based inhibitor of Pseudomonas aeruginosa arginine deiminase.

Xuefeng Lu1, Ling Li, Xiaohua Feng, Yan Wu, Debra Dunaway-Mariano, John R Engen, Patrick S Mariano.   

Abstract

The mechanism for inhibition of the Pseudomonas aeruginosa arginine deiminase (PaADI) by the arginine analogue l-canavanine was investigated. Inhibition by this substance (kinact = 0.31 +/- 0.03 min-1 and Ki = 1.7 +/- 0.5 mM) is associated with the formation of a modestly stable S-alkylthiouronium intermediate, detected by using kinetic techniques and identified by using electrospray ionization mass spectrometry. The electronic and/or orientation effects, caused by oxygen-for-methylene substitution in l-canavanine, on the rate of enzyme regeneration from the S-alkylthiouronium intermediate could serve as the basis for a strategy for the rational design of new slow substrate inhibitors of ADI.

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Year:  2005        PMID: 16305225     DOI: 10.1021/ja056226p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

Review 1.  The Taxonomy of Covalent Inhibitors.

Authors:  Alfred Tuley; Walter Fast
Journal:  Biochemistry       Date:  2018-04-30       Impact factor: 3.162

2.  Born-Oppenheimer ab initio QM/MM molecular dynamics simulations of the hydrolysis reaction catalyzed by protein arginine deiminase 4.

Authors:  Zhihong Ke; Shenglong Wang; Daiqian Xie; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

3.  Cysteine 351 is an essential nucleophile in catalysis by Porphyromonas gingivalis peptidylarginine deiminase.

Authors:  Sofía B Rodríguez; Barbara L Stitt; David E Ash
Journal:  Arch Biochem Biophys       Date:  2010-09-17       Impact factor: 4.013

4.  Ab initio QM/MM free-energy studies of arginine deiminase catalysis: the protonation state of the Cys nucleophile.

Authors:  Zhihong Ke; Hua Guo; Daiqian Xie; Shenglong Wang; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2011-03-11       Impact factor: 2.991

5.  Active site cysteine is protonated in the PAD4 Michaelis complex: evidence from Born-Oppenheimer ab initio QM/MM molecular dynamics simulations.

Authors:  Zhihong Ke; Yanzi Zhou; Po Hu; Shenglong Wang; Daiqian Xie; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2009-09-24       Impact factor: 2.991

6.  Expression of peptidylarginine deiminase from Porphyromonas gingivalis in Escherichia coli: enzyme purification and characterization.

Authors:  Sofía B Rodríguez; Barbara L Stitt; David E Ash
Journal:  Arch Biochem Biophys       Date:  2009-06-21       Impact factor: 4.013

  6 in total

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