Literature DB >> 16303239

Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation.

K Morgenthal1, W Weckwerth, R Steuer.   

Abstract

Nowadays techniques for non-targeted metabolite profiling allow for the generation of huge amounts of relevant data essential for the construction of dynamic metabolomic networks. Thus, metabolomics, besides transcriptomics or proteomics, provides a major tool for the characterization of postgenomic processes. In this work, we introduce comparative correlation analysis as a complementary approach to characterize the physiological states of various organs of diverse plant species with focus on specific participation of metabolites in different reaction networks. The correlations observed are induced by diminutive fluctuations in environmental conditions, which propagate through the system and induce specific patterns depending on the genomic background. In order to examine this hypothesis, numeric examples of such fluctuations are computed and compared with experimentally obtained metabolite data.

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Year:  2005        PMID: 16303239     DOI: 10.1016/j.biosystems.2005.05.017

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  30 in total

1.  Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches.

Authors:  Atsushi Fukushima; Tomoko Nishizawa; Mariko Hayakumo; Shoko Hikosaka; Kazuki Saito; Eiji Goto; Miyako Kusano
Journal:  Plant Physiol       Date:  2012-02-03       Impact factor: 8.340

2.  Metabolomics reveals differential levels of oral metabolites in HIV-infected patients: toward novel diagnostic targets.

Authors:  Mahmoud A Ghannoum; Pranab K Mukherjee; Richard J Jurevic; Mauricio Retuerto; Robert E Brown; Masoumeh Sikaroodi; Jennifer Webster-Cyriaque; Patrick M Gillevet
Journal:  OMICS       Date:  2011-07-13

3.  C4GEM, a genome-scale metabolic model to study C4 plant metabolism.

Authors:  Cristiana Gomes de Oliveira Dal'Molin; Lake-Ee Quek; Robin William Palfreyman; Stevens Michael Brumbley; Lars Keld Nielsen
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

Review 4.  Systems approaches to identifying gene regulatory networks in plants.

Authors:  Terri A Long; Siobhan M Brady; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2008       Impact factor: 13.827

5.  Earthworm metabolomic responses after exposure to aged PCB contaminated soils.

Authors:  Melissa Whitfield Åslund; Myrna J Simpson; André J Simpson; Barbara A Zeeb; Allison Rutter
Journal:  Ecotoxicology       Date:  2012-05-24       Impact factor: 2.823

6.  Chronic Dysregulation of Cortical and Subcortical Metabolism After Experimental Traumatic Brain Injury.

Authors:  Jennifer L McGuire; Erica A K DePasquale; Miki Watanabe; Fatima Anwar; Laura B Ngwenya; Gowtham Atluri; Lindsey E Romick-Rosendale; Robert E McCullumsmith; Nathan K Evanson
Journal:  Mol Neurobiol       Date:  2018-08-01       Impact factor: 5.590

7.  1H NMR metabolomics of earthworm responses to polychlorinated biphenyl (PCB) exposure in soil.

Authors:  Melissa L Whitfield Åslund; André J Simpson; Myrna J Simpson
Journal:  Ecotoxicology       Date:  2011-03-19       Impact factor: 2.823

8.  Mass spectrometry-based metabolomics of single yeast cells.

Authors:  Alfredo J Ibáñez; Stephan R Fagerer; Anna Mareike Schmidt; Pawel L Urban; Konstantins Jefimovs; Philipp Geiger; Reinhard Dechant; Matthias Heinemann; Renato Zenobi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-13       Impact factor: 11.205

9.  AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

Authors:  Cristiana Gomes de Oliveira Dal'Molin; Lake-Ee Quek; Robin William Palfreyman; Stevens Michael Brumbley; Lars Keld Nielsen
Journal:  Plant Physiol       Date:  2009-12-31       Impact factor: 8.340

10.  Constraint-based probabilistic learning of metabolic pathways from tomato volatiles.

Authors:  Anand K Gavai; Yury Tikunov; Remco Ursem; Arnaud Bovy; Fred van Eeuwijk; Harm Nijveen; Peter J F Lucas; Jack A M Leunissen
Journal:  Metabolomics       Date:  2009-05-30       Impact factor: 4.290

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