Literature DB >> 16301800

The structure at 1.6 Angstroms resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana.

Eduard Bitto1, Craig A Bingman, Jason G McCoy, Simon T M Allard, Gary E Wesenberg, George N Phillips.   

Abstract

The crystal structure of the At4g34215 protein of Arabidopsis thaliana was determined by molecular replacement and refined to an R factor of 14.6% (R(free) = 18.3%) at 1.6 Angstroms resolution. The crystal structure confirms that At4g34215 belongs to the SGNH-hydrolase superfamily of enzymes. The catalytic triad of the enzyme comprises residues Ser31, His238 and Asp235. In this structure the catalytic serine residue was found to be covalently modified, possibly by phenylmethylsulfonyl fluoride. The structure also reveals a previously undescribed variation within the active site. The conserved asparagine from block III, which provides a hydrogen bond for an oxyanion hole in the SGNH-hydrolase superfamily enzymes, is missing in At4g34215 and is functionally replaced by Gln30 from block I. This residue is positioned in a catalytically competent conformation by nearby residues, including Gln159, Gly160 and Glu161, which are fully conserved in the carbohydrate esterase family 6 enzymes.

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Year:  2005        PMID: 16301800     DOI: 10.1107/S0907444905034074

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  5 in total

1.  Crystallization and preliminary X-ray analysis of a highly stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.

Authors:  Bum Han Ryu; Duy Duc Nguyen; Tri Duc Ngo; Changsuk Oh; Ramesh Pandian; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

2.  CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases.

Authors:  Ľubica Urbániková
Journal:  3 Biotech       Date:  2021-01-19       Impact factor: 2.406

Review 3.  Understanding the structural and functional properties of carbohydrate esterases with a special focus on hemicellulose deacetylating acetyl xylan esterases.

Authors:  Ayyappa Kumar Sista Kameshwar; Wensheng Qin
Journal:  Mycology       Date:  2018-07-04

Review 4.  The SGNH hydrolase family: a template for carbohydrate diversity.

Authors:  Alexander C Anderson; Stefen Stangherlin; Kyle N Pimentel; Joel T Weadge; Anthony J Clarke
Journal:  Glycobiology       Date:  2022-09-19       Impact factor: 5.954

5.  Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors.

Authors:  Plinio S Vieira; Isabela M Bonfim; Evandro A Araujo; Ricardo R Melo; Augusto R Lima; Melissa R Fessel; Douglas A A Paixão; Gabriela F Persinoti; Silvana A Rocco; Tatiani B Lima; Renan A S Pirolla; Mariana A B Morais; Jessica B L Correa; Leticia M Zanphorlin; Jose A Diogo; Evandro A Lima; Adriana Grandis; Marcos S Buckeridge; Fabio C Gozzo; Celso E Benedetti; Igor Polikarpov; Priscila O Giuseppe; Mario T Murakami
Journal:  Nat Commun       Date:  2021-06-30       Impact factor: 14.919

  5 in total

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