Literature DB >> 16301795

High-throughput phase-diagram mapping via powder diffraction: a case study of HEWL versus pH.

Sebastian Basso1, Andrew N Fitch, Gavin C Fox, Irene Margiolaki, Jonathan P Wright.   

Abstract

44 samples of tetragonal hen egg-white lysozyme (HEWL) were obtained as a series of polycrystalline precipitates at 277 K and room temperature in the pH range between 6.56 and 3.33. The precipitates were investigated by the collection of high-resolution powder X-ray diffraction data at 295 K, which reveal the tetragonal or orthorhombic forms of lysozyme depending on the temperature and pH of crystallization. The use of a new robotic sample changer greatly facilitated these measurements. LeBail analyses of the powder patterns display a characteristic behaviour for the pH dependence of the tetragonal unit-cell parameters of HEWL crystallized at both temperatures. More detailed analysis shows that molecular replacement can give a suitable starting point for structural refinements, illustrating that powder data can be sufficient for this approach. Pawley or Rietveld refinements that fit a single model to four data sets simultaneously from four samples crystallized at pH values across the range studied benefit from improved powder data quality via the anisotropic changes in the unit cell. The Rietveld analysis gave an average structural model with excellent goodness of fit and stereochemistry.

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Year:  2005        PMID: 16301795     DOI: 10.1107/S0907444905031963

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  5 in total

1.  A new approach for structure analysis of two-dimensional membrane protein crystals using X-ray powder diffraction data.

Authors:  R A Dilanian; C Darmanin; J N Varghese; S W Wilkins; T Oka; N Yagi; H M Quiney; K A Nugent
Journal:  Protein Sci       Date:  2011-01-18       Impact factor: 6.725

2.  Coxsackievirus B3 protease 3C: expression, purification, crystallization and preliminary structural insights.

Authors:  Stavroula Fili; Alexandros Valmas; Magdalini Christopoulou; Maria Spiliopoulou; Nikos Nikolopoulos; Julie Lichière; Souzana Logotheti; Fotini Karavassili; Eleftheria Rosmaraki; Andrew Fitch; Jonathan Wright; Detlef Beckers; Thomas Degen; Gwilherm Nénert; Rolf Hilgenfeld; Nicolas Papageorgiou; Bruno Canard; Bruno Coutard; Irene Margiolaki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-11-25       Impact factor: 1.056

3.  Exploiting powder X-ray diffraction for direct structure determination in structural biology: the P2X4 receptor trafficking motif YEQGL.

Authors:  Kotaro Fujii; Mark T Young; Kenneth D M Harris
Journal:  J Struct Biol       Date:  2011-03-05       Impact factor: 2.867

Review 4.  In Quest for Improved Drugs against Diabetes: The Added Value of X-ray Powder Diffraction Methods.

Authors:  Fotini Karavassili; Alexandros Valmas; Stavroula Fili; Christos D Georgiou; Irene Margiolaki
Journal:  Biomolecules       Date:  2017-08-22

5.  On the possibility of using polycrystalline material in the development of structure-based generic assays.

Authors:  Marc Allaire; Natalia Moiseeva; Cristian E Botez; Matthew A Engel; Peter W Stephens
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-03-19
  5 in total

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