Literature DB >> 16301790

Structure of murine angiogenin: features of the substrate- and cell-binding regions and prospects for inhibitor-binding studies.

Daniel E Holloway1, Gayatri B Chavali, Michelle C Hares, Vasanta Subramanian, K Ravi Acharya.   

Abstract

Angiogenin is an unusual member of the pancreatic ribonuclease superfamily that induces blood-vessel formation and is a promising anticancer target. The three-dimensional structure of murine angiogenin (mAng) has been determined by X-ray crystallography. Two structures are presented: one is a complex with sulfate ions (1.5 Angstroms resolution) and the other a complex with phosphate ions (1.6 Angstroms resolution). Residues forming the putative B(1), P(1) and B(2) subsites occupy positions similar to their hAng counterparts and are likely to play similar roles. The anions occupy the P(1) subsite, sulfate binding conventionally and phosphate adopting two orientations, one of which is novel. The B(1) subsite is obstructed by Glu116 and Phe119, with the latter assuming a less invasive position than its hAng counterpart. Hydrophobic interactions between the C-terminal segment and the main body of the protein are more extensive than in hAng and may underly the lower enzymatic activity of the murine protein. Elsewhere, the structure of the H3-B2 loop supports the view that hAng Asn61 interacts directly with cell-surface molecules and does not merely stabilize adjacent regions of the hAng structure. mAng crystals appear to offer small-molecule inhibitors a clear route to the active site and may even withstand a reorientation of the C-terminal segment that provides access to the cryptic B(1) subsite. These features represent considerable advantages over crystalline hAng and bAng.

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Year:  2005        PMID: 16301790      PMCID: PMC1780170          DOI: 10.1107/S0907444905029616

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  60 in total

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2.  Ribonuclease A.

Authors:  Ronald T. Raines
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

3.  Guest-host crosstalk in an angiogenin-RNase A chimeric protein.

Authors:  Daniel E Holloway; Robert Shapiro; Michelle C Hares; Demetres D Leonidas; K Ravi Acharya
Journal:  Biochemistry       Date:  2002-08-20       Impact factor: 3.162

4.  A covalent angiogenin/ribonuclease hybrid with a fourth disulfide bond generated by regional mutagenesis.

Authors:  J W Harper; B L Vallee
Journal:  Biochemistry       Date:  1989-02-21       Impact factor: 3.162

5.  Binding of phosphate and pyrophosphate ions at the active site of human angiogenin as revealed by X-ray crystallography.

Authors:  D D Leonidas; G B Chavali; A M Jardine; S Li; R Shapiro; K R Acharya
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

6.  Amino acid sequence of human tumor derived angiogenin.

Authors:  D J Strydom; J W Fett; R R Lobb; E M Alderman; J L Bethune; J F Riordan; B L Vallee
Journal:  Biochemistry       Date:  1985-09-24       Impact factor: 3.162

7.  Sequence of the cDNA and gene for angiogenin, a human angiogenesis factor.

Authors:  K Kurachi; E W Davie; D J Strydom; J F Riordan; B L Vallee
Journal:  Biochemistry       Date:  1985-09-24       Impact factor: 3.162

8.  A small-molecule inhibitor of the ribonucleolytic activity of human angiogenin that possesses antitumor activity.

Authors:  Richard Y T Kao; Jeremy L Jenkins; Karen A Olson; Marc E Key; James W Fett; Robert Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-12       Impact factor: 11.205

9.  Crystal structure of ribonuclease A.d(ApTpApApG) complex. Direct evidence for extended substrate recognition.

Authors:  J C Fontecilla-Camps; R de Llorens; M H le Du; C M Cuchillo
Journal:  J Biol Chem       Date:  1994-08-26       Impact factor: 5.157

10.  Refined crystal structures of native human angiogenin and two active site variants: implications for the unique functional properties of an enzyme involved in neovascularisation during tumour growth.

Authors:  D D Leonidas; R Shapiro; S C Allen; G V Subbarao; K Veluraja; K R Acharya
Journal:  J Mol Biol       Date:  1999-01-22       Impact factor: 5.469

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3.  Structure of the newly found green turtle egg-white ribonuclease.

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-06-23

4.  The first crystal structure of human RNase 6 reveals a novel substrate-binding and cleavage site arrangement.

Authors:  Guillem Prats-Ejarque; Javier Arranz-Trullén; Jose A Blanco; David Pulido; M Victòria Nogués; Mohammed Moussaoui; Ester Boix
Journal:  Biochem J       Date:  2016-03-24       Impact factor: 3.857

Review 5.  Heparin/Heparan sulfate proteoglycans glycomic interactome in angiogenesis: biological implications and therapeutical use.

Authors:  Paola Chiodelli; Antonella Bugatti; Chiara Urbinati; Marco Rusnati
Journal:  Molecules       Date:  2015-04-10       Impact factor: 4.411

6.  Crystal structures of murine angiogenin-2 and -3-probing 'structure--function' relationships amongst angiogenin homologues.

Authors:  Shalini Iyer; Daniel E Holloway; K Ravi Acharya
Journal:  FEBS J       Date:  2012-12-11       Impact factor: 5.542

7.  Crystal structure of human angiogenin with an engineered loop exhibits conformational flexibility at the functional regions of the molecule.

Authors:  Nethaji Thiyagarajan; K Ravi Acharya
Journal:  FEBS Open Bio       Date:  2012-12-26       Impact factor: 2.693

  7 in total

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