Literature DB >> 16301076

Automatic program for peak detection and deconvolution of multi-overlapped chromatographic signals part I: peak detection.

G Vivó-Truyols1, J R Torres-Lapasió, A M van Nederkassel, Y Vander Heyden, D L Massart.   

Abstract

A series of two papers describing a procedure for automated peak deconvolution is presented. The goal is to develop a package of routines that can be used by non-experienced users. Part I (this paper) concerns peak detection, whereas Part II is dedicated to the deconvolution itself. In this first part, the most interesting features of the peak detection algorithms, which precede the deconvolution step, are outlined. High-order derivatives provide valuable information to assess the number of underlying compounds under a given peak cluster. A smoothing technique was found essential to compute properly the derivatives, since the noise is amplified when differences are calculated. The Savitsky-Golay smoother was applied in combination with the Durbin-Watson criterion to automate the window size selection. This strategy removed the noise without loosing valuable information. In some cases, it was found preferable to split the chromatogram in different elution regions, and apply the Durbin-Watson test and the Savitsky-Golay smoother to each region, separately. The derivatives allowed obtaining estimates of both peak parameters and the corresponding ranges for each eluting compound to be used in the deconvolution. An algorithm oriented to compare peaks from different chromatograms is also presented to perform deconvolution, using information from several related chromatograms.

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Year:  2005        PMID: 16301076     DOI: 10.1016/j.chroma.2005.03.092

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  10 in total

Review 1.  Biochemical individuality reflected in chromatographic, electrophoretic and mass-spectrometric profiles.

Authors:  Milos V Novotny; Helena A Soini; Yehia Mechref
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2008-04-15       Impact factor: 3.205

Review 2.  Applications of metabolomics for kidney disease research: from biomarkers to therapeutic targets.

Authors:  Hiromi I Wettersten; Robert H Weiss
Journal:  Organogenesis       Date:  2013-01-01       Impact factor: 2.500

3.  Quantitative detection of trace explosive vapors by programmed temperature desorption gas chromatography-electron capture detector.

Authors:  Christopher R Field; Adam Lubrano; Morgan Woytowitz; Braden C Giordano; Susan L Rose-Pehrsson
Journal:  J Vis Exp       Date:  2014-07-25       Impact factor: 1.355

Review 4.  Recent applications of chemometrics in one- and two-dimensional chromatography.

Authors:  Tijmen S Bos; Wouter C Knol; Stef R A Molenaar; Leon E Niezen; Peter J Schoenmakers; Govert W Somsen; Bob W J Pirok
Journal:  J Sep Sci       Date:  2020-03-19       Impact factor: 3.645

5.  Identification and accurate quantitation of biological oligosaccharide mixtures.

Authors:  John S Strum; Jaehan Kim; Shuai Wu; Maria Lorna A De Leoz; Kyle Peacock; Rudolf Grimm; J Bruce German; David A Mills; Carlito B Lebrilla
Journal:  Anal Chem       Date:  2012-08-29       Impact factor: 6.986

6.  Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes.

Authors:  Jonathan Lu; Michael J Trnka; Soung-Hun Roh; Philip J J Robinson; Carrie Shiau; Danica Galonic Fujimori; Wah Chiu; Alma L Burlingame; Shenheng Guan
Journal:  J Am Soc Mass Spectrom       Date:  2015-09-01       Impact factor: 3.109

7.  Neuromodulation of motor-evoked potentials during stepping in spinal rats.

Authors:  Parag Gad; Igor Lavrov; Prithvi Shah; Hui Zhong; Roland R Roy; V Reggie Edgerton; Yury Gerasimenko
Journal:  J Neurophysiol       Date:  2013-06-12       Impact factor: 2.714

8.  Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis.

Authors:  Christian L Barrett; Byung-Kwan Cho; Bernhard O Palsson
Journal:  Nucleic Acids Res       Date:  2010-11-04       Impact factor: 16.971

9.  Joint Bounding of Peaks Across Samples Improves Differential Analysis in Mass Spectrometry-Based Metabolomics.

Authors:  Leslie Myint; Andre Kleensang; Liang Zhao; Thomas Hartung; Kasper D Hansen
Journal:  Anal Chem       Date:  2017-03-07       Impact factor: 6.986

10.  HappyTools: A software for high-throughput HPLC data processing and quantitation.

Authors:  Bas Cornelis Jansen; Lise Hafkenscheid; Albert Bondt; Richard Andrew Gardner; Jenifer Lynn Hendel; Manfred Wuhrer; Daniel Ian Richard Spencer
Journal:  PLoS One       Date:  2018-07-06       Impact factor: 3.240

  10 in total

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