Literature DB >> 16297077

Efficient insertional mutagenesis in rice using the maize En/Spm elements.

Chellian Santhosh Kumar1, Rod A Wing, Venkatesan Sundaresan.   

Abstract

We have developed a novel system for insertional mutagenesis in rice (Oryza sativa) based on the maize (Zea mays) enhancer/suppressor mutator (En/Spm) element. In this system, a single T-DNA construct with Spm-transposase and the non-autonomous defective suppressor mutator (dSpm) element is used in conjunction with green fluorescent protein (GFP) and Discosoma sp. Red Fluorescence Protein (DsRed) fluorescent markers to select unlinked stable transpositions of dSpm. Using this system, we could demonstrate high frequencies of unlinked germinal transposition of dSpm in rice. Analysis of dSpm flanking sequences from 353 stable insertion lines revealed that the dSpm insertions appear to be widely distributed on rice chromosomes with a preference for genic regions (70%). The dSpm insertions appear to differ from Activator-Dissociation (Ac-Ds) elements in genomic distribution and exhibit a greater fraction of unlinked transpositions when compared with Ds elements. The results obtained in this study demonstrate that the maize En/Spm element can be used as an effective tool for functional genomics in rice and can complement efforts using other insertional mutagens. Further, the efficacy of the non-invasive fluorescence-based selection system is promising for its application to other crops.

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Year:  2005        PMID: 16297077     DOI: 10.1111/j.1365-313X.2005.02570.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  32 in total

1.  Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice.

Authors:  Kyoko Takagi; Masahiko Maekawa; Kazuo Tsugane; Shigeru Iida
Journal:  Mol Genet Genomics       Date:  2010-09-10       Impact factor: 3.291

2.  A rice gene activation/knockout mutant resource for high throughput functional genomics.

Authors:  Yue-Ie Hsing; Chyr-Guan Chern; Ming-Jen Fan; Po-Chang Lu; Ku-Ting Chen; Shuen-Fang Lo; Peng-Kai Sun; Shin-Lon Ho; Kuo-Wei Lee; Yi-Chieh Wang; Wen-Lii Huang; Swee-Suak Ko; Shu Chen; Jyh-Long Chen; Chun-I Chung; Yao-Cheng Lin; Ai-Ling Hour; Yet-Walt Wang; Ya-Chi Chang; Min-Wei Tsai; Yi-Show Lin; Yin-Chin Chen; Hsing-Mu Yen; Charng-Pei Li; Chiu-Kai Wey; Ching-Shan Tseng; Ming-Hsing Lai; Sheng-Chung Huang; Liang-Jwu Chen; Su-May Yu
Journal:  Plant Mol Biol       Date:  2006-11-21       Impact factor: 4.076

3.  Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize.

Authors:  Weichang Yu; Jonathan C Lamb; Fangpu Han; James A Birchler
Journal:  Genetics       Date:  2006-10-22       Impact factor: 4.562

4.  Ds insertion mutagenesis as an efficient tool to produce diverse variations for rice breeding.

Authors:  Shu-Ye Jiang; Doris Bachmann; Honggui La; Zhigang Ma; Prasanna Nori Venkatesh; Rengasamy Ramamoorthy; Srinivasan Ramachandran
Journal:  Plant Mol Biol       Date:  2007-09-19       Impact factor: 4.076

5.  Analysis of gene-trap Ds rice populations in Korea.

Authors:  Sung Han Park; Nam Soo Jun; Chul Min Kim; Tae Yong Oh; Jin Huang; Yuan-Hu Xuan; Soon Ju Park; Byoung Il Je; Hai Long Piao; Soo Hyun Park; Young Soon Cha; Byung Ohg Ahn; Hyeon So Ji; Myung Chul Lee; Seok Cheol Suh; Min-Hee Nam; Moo Young Eun; Gihwan Yi; Doh Won Yun; Chang-Deok Han
Journal:  Plant Mol Biol       Date:  2007-07-05       Impact factor: 4.076

6.  Mutant resources in rice for functional genomics of the grasses.

Authors:  Arjun Krishnan; Emmanuel Guiderdoni; Gynheung An; Yue-ie C Hsing; Chang-deok Han; Myung Chul Lee; Su-May Yu; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Venkatesan Sundaresan; Hirohiko Hirochika; Hei Leung; Andy Pereira
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

7.  DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles.

Authors:  Sanzhen Liu; Charles R Dietrich; Patrick S Schnable
Journal:  Genetics       Date:  2009-10-05       Impact factor: 4.562

Review 8.  Genomics and bioinformatics resources for crop improvement.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2010-03-05       Impact factor: 4.927

9.  A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.

Authors:  Shaohong Qu; Aparna Desai; Rod Wing; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2007-11-09       Impact factor: 8.340

Review 10.  Natural and artificial mutants as valuable resources for functional genomics and molecular breeding.

Authors:  Shu-Ye Jiang; Srinivasan Ramachandran
Journal:  Int J Biol Sci       Date:  2010-04-28       Impact factor: 6.580

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