Literature DB >> 16291738

Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase.

Olaniyi Opaleye1, Ruth-Sarah Rose, Mei M Whittaker, Eui-Jeon Woo, James W Whittaker, Richard W Pickersgill.   

Abstract

Oxalate oxidase (EC 1.2.3.4) catalyzes the conversion of oxalate and dioxygen to hydrogen peroxide and carbon dioxide. In this study, glycolate was used as a structural analogue of oxalate to investigate substrate binding in the crystalline enzyme. The observed monodentate binding of glycolate to the active site manganese ion of oxalate oxidase is consistent with a mechanism involving C-C bond cleavage driven by superoxide anion attack on a monodentate coordinated substrate. In this mechanism, the metal serves two functions: to organize the substrates (oxalate and dioxygen) and to transiently reduce dioxygen. The observed structure further implies important roles for specific active site residues (two asparagines and one glutamine) in correctly orientating the substrates and reaction intermediates for catalysis. Combined spectroscopic, biochemical, and structural analyses of mutants confirms the importance of the asparagine residues in organizing a functional active site complex.

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Year:  2005        PMID: 16291738     DOI: 10.1074/jbc.M510256200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

1.  The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations.

Authors:  Victoria J Just; Matthew R Burrell; Laura Bowater; Iain McRobbie; Clare E M Stevenson; David M Lawson; Stephen Bornemann
Journal:  Biochem J       Date:  2007-11-01       Impact factor: 3.857

2.  Characterization of Ceriporiopsis subvermispora bicupin oxalate oxidase expressed in Pichia pastoris.

Authors:  Patricia Moussatche; Alexander Angerhofer; Witcha Imaram; Eric Hoffer; Kelsey Uberto; Christopher Brooks; Crystal Bruce; Daniel Sledge; Nigel G J Richards; Ellen W Moomaw
Journal:  Arch Biochem Biophys       Date:  2011-03-02       Impact factor: 4.013

3.  Steric control of dioxygen activation pathways for MnII complexes supported by pentadentate, amide-containing ligands.

Authors:  Joshua D Parham; Gayan B Wijeratne; Jaycee R Mayfield; Timothy A Jackson
Journal:  Dalton Trans       Date:  2019-08-13       Impact factor: 4.390

Review 4.  The Metal Drives the Chemistry: Dual Functions of Acireductone Dioxygenase.

Authors:  Aditi R Deshpande; Thomas C Pochapsky; Dagmar Ringe
Journal:  Chem Rev       Date:  2017-07-21       Impact factor: 60.622

5.  Geometric and electronic structure of a peroxomanganese(III) complex supported by a scorpionate ligand.

Authors:  Hannah E Colmer; Robert A Geiger; Domenick F Leto; Gayan B Wijeratne; Victor W Day; Timothy A Jackson
Journal:  Dalton Trans       Date:  2014-10-14       Impact factor: 4.390

Review 6.  Oxygen activation by mononuclear Mn, Co, and Ni centers in biology and synthetic complexes.

Authors:  Adam T Fiedler; Anne A Fischer
Journal:  J Biol Inorg Chem       Date:  2016-11-16       Impact factor: 3.358

7.  Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis.

Authors:  Drazenka Svedruzić; Yong Liu; Laurie A Reinhardt; Ewa Wroclawska; W Wallace Cleland; Nigel G J Richards
Journal:  Arch Biochem Biophys       Date:  2007-04-05       Impact factor: 4.013

8.  Reaction landscape of a pentadentate N5-ligated Mn(II) complex with O2˙- and H2O2 includes conversion of a peroxomanganese(III) adduct to a bis(μ-oxo)dimanganese(III,IV) species.

Authors:  Domenick F Leto; Swarup Chattopadhyay; Victor W Day; Timothy A Jackson
Journal:  Dalton Trans       Date:  2013-07-19       Impact factor: 4.390

9.  Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.

Authors:  Robbie P Joosten; Thomas Womack; Gert Vriend; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  Structure-based phylogeny as a diagnostic for functional characterization of proteins with a cupin fold.

Authors:  Garima Agarwal; Malligarjunan Rajavel; Balasubramanian Gopal; Narayanaswamy Srinivasan
Journal:  PLoS One       Date:  2009-05-29       Impact factor: 3.240

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