Literature DB >> 16291210

Site-specific DNA recombinases as instruments for genomic surgery.

Aram Akopian1, W Marshall Stark.   

Abstract

Site-specific DNA recombinases can "cut and paste" DNA. For example, they can promote excision of specific DNA segments or insertion of new DNA segments in specific places. However, natural recombinases act only at their cognate recombination sites, so current applications are limited to genetically modified organisms in which these sites have been introduced into the genome. Transposases also catalyze DNA rearrangements; they promote insertion of specific DNA sequences but at nonspecific locations. Applicability of site-specific recombinases and transposases in experimental genetics, biotechnology, and gene therapy would be much wider if they could be re-engineered so as to act specifically at chosen sequences within an organism's natural genome. This review will discuss progress towards the creation of such "designer" recombinases.

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Year:  2005        PMID: 16291210     DOI: 10.1016/S0065-2660(05)55001-6

Source DB:  PubMed          Journal:  Adv Genet        ISSN: 0065-2660            Impact factor:   1.944


  12 in total

1.  Structure-guided reprogramming of serine recombinase DNA sequence specificity.

Authors:  Thomas Gaj; Andrew C Mercer; Charles A Gersbach; Russell M Gordley; Carlos F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

2.  A photoactivatable Cre-loxP recombination system for optogenetic genome engineering.

Authors:  Fuun Kawano; Risako Okazaki; Masayuki Yazawa; Moritoshi Sato
Journal:  Nat Chem Biol       Date:  2016-10-10       Impact factor: 15.040

3.  Directed evolution of recombinase specificity by split gene reassembly.

Authors:  Charles A Gersbach; Thomas Gaj; Russell M Gordley; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

4.  Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes.

Authors:  Pawel Zawadzki; Peter F J May; Rachel A Baker; Justin N M Pinkney; Achillefs N Kapanidis; David J Sherratt; Lidia K Arciszewska
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

5.  Engineering of a target site-specific recombinase by a combined evolution- and structure-guided approach.

Authors:  Josephine Abi-Ghanem; Janet Chusainow; Madina Karimova; Christopher Spiegel; Helga Hofmann-Sieber; Joachim Hauber; Frank Buchholz; M Teresa Pisabarro
Journal:  Nucleic Acids Res       Date:  2012-12-28       Impact factor: 16.971

6.  Zinc-finger recombinase activities in vitro.

Authors:  Marko M Prorocic; Dong Wenlong; Femi J Olorunniji; Aram Akopian; Jan-Gero Schloetel; Adèle Hannigan; Arlene L McPherson; W Marshall Stark
Journal:  Nucleic Acids Res       Date:  2011-08-17       Impact factor: 16.971

7.  Regulatory mutations in Sin recombinase support a structure-based model of the synaptosome.

Authors:  Sally-J Rowland; Martin R Boocock; Arlene L McPherson; Kent W Mouw; Phoebe A Rice; W Marshall Stark
Journal:  Mol Microbiol       Date:  2009-06-08       Impact factor: 3.501

8.  Recombinant protein expression by targeting pre-selected chromosomal loci.

Authors:  Kristina Nehlsen; Roland Schucht; Leonor da Gama-Norton; Wolfgang Krömer; Alexandra Baer; Aziz Cayli; Hansjörg Hauser; Dagmar Wirth
Journal:  BMC Biotechnol       Date:  2009-12-14       Impact factor: 2.563

9.  Zinc finger recombinases with adaptable DNA sequence specificity.

Authors:  Chris Proudfoot; Arlene L McPherson; Andreas F Kolb; W Marshall Stark
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

10.  Synapsis and catalysis by activated Tn3 resolvase mutants.

Authors:  Femi J Olorunniji; Jiuya He; Sandra V C T Wenwieser; Martin R Boocock; W Marshall Stark
Journal:  Nucleic Acids Res       Date:  2008-11-10       Impact factor: 16.971

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