Literature DB >> 16290062

Molecular epidemiology of clonal diploids: a quick overview and a short DIY (do it yourself) notice.

Thierry De Meeûs1, Laurent Lehmann, François Balloux.   

Abstract

In this short review we report the basic notions needed for understanding the population genetics of clonal diploids. We focus on the consequences of clonality on the distribution of genetic diversity within individuals, between individuals and between populations. We then summarise how to detect clonality in mainly sexual populations, conversely, how to detect sexuality in mainly clonal populations and also how genetic differentiation between populations is affected by clonality in diploids. This information is then used for building recipes on how to analyse and interpret genetic polymorphism data in molecular epidemiology studies of clonal diploids.

Mesh:

Year:  2005        PMID: 16290062     DOI: 10.1016/j.meegid.2005.02.004

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  28 in total

1.  Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa.

Authors:  Michel Tibayrenc; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

2.  Effects of complex life cycles on genetic diversity: cyclical parthenogenesis.

Authors:  R Rouger; K Reichel; F Malrieu; J P Masson; S Stoeckel
Journal:  Heredity (Edinb)       Date:  2016-07-20       Impact factor: 3.821

Review 3.  The frequency of sex in fungi.

Authors:  Bart P S Nieuwenhuis; Timothy Y James
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

4.  Global genome diversity of the Leishmania donovani complex.

Authors:  Susanne U Franssen; Caroline Durrant; Olivia Stark; Bettina Moser; Tim Downing; Hideo Imamura; Jean-Claude Dujardin; Mandy J Sanders; Isabel Mauricio; Michael A Miles; Lionel F Schnur; Charles L Jaffe; Abdelmajeed Nasereddin; Henk Schallig; Matthew Yeo; Tapan Bhattacharyya; Mohammad Z Alam; Matthew Berriman; Thierry Wirth; Gabriele Schönian; James A Cotton
Journal:  Elife       Date:  2020-03-25       Impact factor: 8.140

5.  Extreme inbreeding in Leishmania braziliensis.

Authors:  Virginie Rougeron; Thierry De Meeûs; Mallorie Hide; Etienne Waleckx; Herman Bermudez; Jorge Arevalo; Alejandro Llanos-Cuentas; Jean-Claude Dujardin; Simone De Doncker; Dominique Le Ray; Francisco J Ayala; Anne-Laure Bañuls
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-04       Impact factor: 11.205

6.  Extremely reduced levels of heterozygosity in the vertebrate pathogen Encephalitozoon cuniculi.

Authors:  Mohammed Selman; Bohumil Sak; Martin Kváč; Laurent Farinelli; Louis M Weiss; Nicolas Corradi
Journal:  Eukaryot Cell       Date:  2013-02-02

7.  Population genetics of Trypanosoma brucei gambiense, the agent of sleeping sickness in Western Africa.

Authors:  Mathurin Koffi; Thierry De Meeûs; Bruno Bucheton; Philippe Solano; Mamadou Camara; Dramane Kaba; Gérard Cuny; Francisco J Ayala; Vincent Jamonneau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-23       Impact factor: 11.205

8.  Population sub-structuring among Trypanosoma evansi stocks.

Authors:  Z K Njiru; C C Constantine
Journal:  Parasitol Res       Date:  2007-06-22       Impact factor: 2.289

9.  Genome-scale multilocus microsatellite typing of Trypanosoma cruzi discrete typing unit I reveals phylogeographic structure and specific genotypes linked to human infection.

Authors:  Martin S Llewellyn; Michael A Miles; Hernan J Carrasco; Michael D Lewis; Matthew Yeo; Jorge Vargas; Faustino Torrico; Patricio Diosque; Vera Valente; Sebastiao A Valente; Michael W Gaunt
Journal:  PLoS Pathog       Date:  2009-05-01       Impact factor: 6.823

10.  Trypanosoma cruzi IIc: phylogenetic and phylogeographic insights from sequence and microsatellite analysis and potential impact on emergent Chagas disease.

Authors:  Martin S Llewellyn; Michael D Lewis; Nidia Acosta; Matthew Yeo; Hernan J Carrasco; Maikell Segovia; Jorge Vargas; Faustino Torrico; Michael A Miles; Michael W Gaunt
Journal:  PLoS Negl Trop Dis       Date:  2009-09-01
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