Literature DB >> 16288718

Role of acidic amino acid residues in chitooligosaccharide-binding to Streptomyces sp. N174 chitosanase.

Tomomi Katsumi1, Marie-Eve Lacombe-Harvey, Hugo Tremblay, Ryszard Brzezinski, Tamo Fukamizo.   

Abstract

We examined the oligosaccharide binding to Streptomyces sp. N174 chitosanase by fluorescence spectroscopy. By means of the tryptophan fluorescence quenching, the oligosaccharide binding abilities were evaluated using the three mutant enzymes (D57A, E197A, and D201A). The enzymatic activities of the mutant enzymes were 0.5%, 20.0%, and 38.5% of that of the wild type, respectively. Scatchard plot obtained for the wild type enzyme showed a biphasic profile, suggesting that the oligosaccharide binds to the chitosanase with two different binding sites (the high affinity site and the low affinity site). In contrast, Scatchard plot for E197A exhibited a monophasic profile, in which the slope of the line corresponds to that for the low affinity binding of the wild type enzyme. A monophasic profile was also obtained for D201A, but the slope of the line was similar to that of the high affinity binding. Thus, we conclude that Glu197 and Asp201 are responsible for oligosaccharide binding at the high affinity site and the low affinity site, respectively, which correspond to the (-n) subsites and the (+n) subsites (n=1, 2, and 3). The fluorescence quenching was very weak in D57A, suggesting a strong contribution of this residue to the oligosaccharide binding.

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Year:  2005        PMID: 16288718     DOI: 10.1016/j.bbrc.2005.10.157

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  6 in total

1.  Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble.

Authors:  Tong Liu; Steven T Whitten; Vincent J Hilser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

2.  NMR line shape analysis of a multi-state ligand binding mechanism in chitosanase.

Authors:  Shoko Shinya; Mariana G Ghinet; Ryszard Brzezinski; Kyoko Furuita; Chojiro Kojima; Sneha Shah; Evgenii L Kovrigin; Tamo Fukamizo
Journal:  J Biomol NMR       Date:  2017-04-09       Impact factor: 2.835

3.  Squid pen chitin chitooligomers as food colorants absorbers.

Authors:  Tzu-Wen Liang; Chih-Ting Huang; Nguyen Anh Dzung; San-Lang Wang
Journal:  Mar Drugs       Date:  2015-01-20       Impact factor: 5.118

Review 4.  Chitosanases from Family 46 of Glycoside Hydrolases: From Proteins to Phenotypes.

Authors:  Pascal Viens; Marie-Ève Lacombe-Harvey; Ryszard Brzezinski
Journal:  Mar Drugs       Date:  2015-10-28       Impact factor: 5.118

5.  Chitinolytic Bacteria-Assisted Conversion of Squid Pen and Its Effect on Dyes and Pigments Adsorption.

Authors:  Tzu-Wen Liang; Bo-Chang Lo; San-Lang Wang
Journal:  Mar Drugs       Date:  2015-07-23       Impact factor: 5.118

6.  A highly conserved arginine residue of the chitosanase from Streptomyces sp. N174 is involved both in catalysis and substrate binding.

Authors:  Marie-Ève Lacombe-Harvey; Mélanie Fortin; Takayuki Ohnuma; Tamo Fukamizo; Thomas Letzel; Ryszard Brzezinski
Journal:  BMC Biochem       Date:  2013-09-16       Impact factor: 4.059

  6 in total

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