Literature DB >> 16285675

Probing protein tertiary structure with amidination.

Dariusz J Janecki1, Richard L Beardsley, James P Reilly.   

Abstract

A chemical derivatization method, amidination, that has recently been effectively employed in peptide mass spectrometry experiments is used to covalently modify lysines in several standard proteins. Protein and peptide mass spectra identify sites at which the reaction does or does not occur. This is therefore a rapid approach to elucidate solvent-accessible regions of folded proteins.

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Year:  2005        PMID： 16285675     DOI： 10.1021/ac050891z

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


  15 in total

1.  'Fixed charge' chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility.

Authors:  Xiao Zhou; Yali Lu; Wenjing Wang; Babak Borhan; Gavin E Reid
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-08       Impact factor: 3.109

2.  Mapping surface accessibility of the C1r/C1s tetramer by chemical modification and mass spectrometry provides new insights into assembly of the human C1 complex.

Authors:  Sébastien Brier; Delphine Pflieger; Maxime Le Mignon; Isabelle Bally; Christine Gaboriaud; Gérard J Arlaud; Régis Daniel
Journal:  J Biol Chem       Date:  2010-06-30       Impact factor: 5.157

3.  Ratiometric pulse-chase amidination mass spectrometry as a probe of biomolecular complex formation.

Authors:  Feng-Ming James Chang; Matthew A Lauber; William E Running; James P Reilly; David P Giedroc
Journal:  Anal Chem       Date:  2011-10-31       Impact factor: 6.986

Review 4.  Probing protein structure by amino acid-specific covalent labeling and mass spectrometry.

Authors:  Vanessa Leah Mendoza; Richard W Vachet
Journal:  Mass Spectrom Rev       Date:  2009 Sep-Oct       Impact factor: 10.946

5.  Stochastic dynamics of bionanosystems: Multiscale analysis and specialized ensembles.

Authors:  S Pankavich; Y Miao; J Ortoleva; Z Shreif; P Ortoleva
Journal:  J Chem Phys       Date:  2008-06-21       Impact factor: 3.488

6.  RNA binding by the NS3 protease of the hepatitis C virus.

Authors:  Robert Vaughan; Yi Li; Baochang Fan; C T Ranjith-Kumar; C Cheng Kao
Journal:  Virus Res       Date:  2012-07-16       Impact factor: 3.303

7.  Identification and functional characterization of the nascent RNA contacting residues of the hepatitis C virus RNA-dependent RNA polymerase.

Authors:  Robert Vaughan; Baochang Fan; Jin-Sam You; C Cheng Kao
Journal:  RNA       Date:  2012-06-26       Impact factor: 4.942

8.  Mapping protein surface accessibility via an electron transfer dissociation selectively cleavable hydrazone probe.

Authors:  Lisa Vasicek; John P O'Brien; Karen S Browning; Zhihua Tao; Hung-Wen Liu; Jennifer S Brodbelt
Journal:  Mol Cell Proteomics       Date:  2012-03-05       Impact factor: 5.911

Review 9.  Mass Spectrometry-Based Protein Footprinting for Higher-Order Structure Analysis: Fundamentals and Applications.

Authors:  Xiaoran Roger Liu; Mengru Mira Zhang; Michael L Gross
Journal:  Chem Rev       Date:  2020-04-22       Impact factor: 60.622

10.  Solution insights into the structure of the Efb/C3 complement inhibitory complex as revealed by lysine acetylation and mass spectrometry.

Authors:  Hui Chen; Michael C Schuster; Georgia Sfyroera; Brian V Geisbrecht; John D Lambris
Journal:  J Am Soc Mass Spectrom       Date:  2008-01       Impact factor: 3.109
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