Literature DB >> 16278917

Development of a ligand knowledge base, part 1: computational descriptors for phosphorus donor ligands.

Natalie Fey1, Athanassios C Tsipis, Stephanie E Harris, Jeremy N Harvey, A Guy Orpen, Ralph A Mansson.   

Abstract

A prototype collection of knowledge on ligands in metal complexes, termed a ligand knowledge base (LKB), has been developed. This contribution describes the design of DFT-calculated descriptors for monodentate phosphorus(III) donor ligands in a range of representative complexes. Using the resulting data, a ligand space is mapped and predictive models are derived for metal complexes. Important characteristics, including chemical, computational and statistical robustness for the generation and exploitation of such an LKB are described. Chemical robustness ensures transferability of the descriptors, as well as comprehensive sampling of ligand space. To make the calculations amenable to automation in an e-science setting, a reliable, well-defined computational approach has been sought from which the descriptors can be readily extracted. The LKB has been explored with multivariate statistical methods. Principal component analysis (PCA) is used for the mapping of chemical space, projecting multiple descriptors into scatter plots which illustrate the clustering of chemically similar ligands. Interpretation of the resulting principal components in terms of established steric and electronic properties and the importance of its statistical robustness to variations in the ligand set are discussed. Multiple linear regression (MLR) models have been derived, demonstrating the versatility of the descriptors for modeling varied experimentally determined parameters (bond lengths, reaction enthalpies and bond-stretching frequencies). The importance of re-sampling methods for testing the robustness of predictions is highlighted. A strategy for the construction of a robust LKB suitable for the modeling of ligand and complex behavior is outlined based on these observations.

Entities:  

Year:  2005        PMID: 16278917     DOI: 10.1002/chem.200500891

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  7 in total

1.  Parameterization of phosphine ligands reveals mechanistic pathways and predicts reaction outcomes.

Authors:  Zachary L Niemeyer; Anat Milo; David P Hickey; Matthew S Sigman
Journal:  Nat Chem       Date:  2016-05-16       Impact factor: 24.427

2.  Iterative Supervised Principal Component Analysis Driven Ligand Design for Regioselective Ti-Catalyzed Pyrrole Synthesis.

Authors:  Xin Yi See; Xuelan Wen; T Alexander Wheeler; Channing K Klein; Jason D Goodpaster; Benjamin R Reiner; Ian A Tonks
Journal:  ACS Catal       Date:  2020-11-05       Impact factor: 13.084

Review 3.  A Review of State of the Art in Phosphine Ligated Gold Clusters and Application in Catalysis.

Authors:  Rohul H Adnan; Jenica Marie L Madridejos; Abdulrahman S Alotabi; Gregory F Metha; Gunther G Andersson
Journal:  Adv Sci (Weinh)       Date:  2022-03-25       Impact factor: 17.521

4.  Lost in chemical space? Maps to support organometallic catalysis.

Authors:  Natalie Fey
Journal:  Chem Cent J       Date:  2015-06-18       Impact factor: 4.215

5.  A reactivity model for oxidative addition to palladium enables quantitative predictions for catalytic cross-coupling reactions.

Authors:  Jingru Lu; Sofia Donnecke; Irina Paci; David C Leitch
Journal:  Chem Sci       Date:  2022-02-28       Impact factor: 9.825

6.  Quantum-mechanical transition-state model combined with machine learning provides catalyst design features for selective Cr olefin oligomerization.

Authors:  Steven M Maley; Doo-Hyun Kwon; Nick Rollins; Johnathan C Stanley; Orson L Sydora; Steven M Bischof; Daniel H Ess
Journal:  Chem Sci       Date:  2020-08-21       Impact factor: 9.825

7.  Expansion of the Ligand Knowledge Base for Chelating P,P-Donor Ligands (LKB-PP).

Authors:  Jesús Jover; Natalie Fey; Jeremy N Harvey; Guy C Lloyd-Jones; A Guy Orpen; Gareth J J Owen-Smith; Paul Murray; David R J Hose; Robert Osborne; Mark Purdie
Journal:  Organometallics       Date:  2012-07-30       Impact factor: 3.876

  7 in total

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